Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13870 40 / 0.0009 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021900 [exp] 97 / 1e-24 AT3G11770 77 / 3e-17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.011G116000 [exp] 54 / 7e-09 AT3G12410 91 / 2e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036491 [exp] 80 / 6e-18 AT3G11770 64 / 4e-12 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10010357 [exp] 78 / 4e-17 AT3G11770 66 / 7e-13 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039164 [exp] 64 / 2e-12 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10013769 [exp] 62 / 1e-11 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10029479 [exp] 44 / 2e-05 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 44 / 4e-05 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029478 [exp] 40 / 0.0007 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Potri.013G049000.2 pacid=42810984 polypeptide=Potri.013G049000.2.p locus=Potri.013G049000 ID=Potri.013G049000.2.v4.1 annot-version=v4.1 ATGGATACGTTTCTTATTCCTATGACCGATGGCAATGATCTATCCACAACGCTGGTGTCTGAAAAGGATGACATAGATCTTAGCTTCAACCTGCTATTTC GTGATGCGGCGGGTGACAAGGTTGTGGGGTTCGACACGGAGTACTCTCTGGAGCCAAAATTTAGCAGAGATTTAAATGCACATGTTGTTGAGAAAAGAAT TGCTCTAGTGAAACTGTGCACTCAATACAGATGCATATTGTTCAGGCTTGACAGAGATAACGTCGATTACGTGCATCTGCTGAAGAAACTGTCAGCGTTG CTGGCTAACAAGGACATTGTTTTCGTCGGCGTTCGAAAGAGAGATGACCTTGTAAAACTTCGGAACGAATATGGGCTAGAAATCTCCAATTTAGTGGAGT TGAGTGAGTTGGTAGTGAGTCTTCGTGGCGAGCCTGCTCTTGGCACGTACGGGGCCAGGGATTTGGCTAGTAATCTTGAGGTTCTTCGGTATCTTGAACC GAGAAATTCCATCCTTTCTTTGATCAACTGGCTGGATAATTCGCTAAATAGGCAACAGGTTATGTGTGCAGTTATTGATACGTATGCTGCCTACAAAATT GGCAAGAAGTTACTGGATGATCGGCCAAGGAAGTATATTTACTAG
AA sequence Show only first row Show all	>Potri.013G049000.2 pacid=42810984 polypeptide=Potri.013G049000.2.p locus=Potri.013G049000 ID=Potri.013G049000.2.v4.1 annot-version=v4.1 MDTFLIPMTDGNDLSTTLVSEKDDIDLSFNLLFRDAAGDKVVGFDTEYSLEPKFSRDLNAHVVEKRIALVKLCTQYRCILFRLDRDNVDYVHLLKKLSAL LANKDIVFVGVRKRDDLVKLRNEYGLEISNLVELSELVVSLRGEPALGTYGARDLASNLEVLRYLEPRNSILSLINWLDNSLNRQQVMCAVIDTYAAYKI GKKLLDDRPRKYIY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06450			Polynucleotidyl transferase, r...		Potri.013G049000 [exp]	0	1
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G064632 [exp]	32.03	0.6911
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.012G035600 [exp]	34.46	0.7164
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.008G065500 [exp]	43.79	0.7059
AT2G37520			Acyl-CoA N-acyltransferase wit...		Potri.009G016832 [exp]	53.06	0.6752
AT5G47530			Auxin-responsive family protei...		Potri.019G095800 [exp]	71.55	0.6691
AT1G04645			Plant self-incompatibility pro...		Potri.018G148700 [exp]	113.20	0.6580	Pt-C541.4
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G038400 [exp]	138.56	0.6150

Compare expression of checked genes

Potri.013G049000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.