Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18480 661 / 0 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G77130 129 / 2e-31 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT1G08990 120 / 6e-29 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT3G18660 120 / 2e-28 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT4G16600 111 / 4e-26 Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G33330 112 / 7e-26 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G54940 110 / 1e-25 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT2G35710 103 / 3e-23 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2.3) AT1G60450 76 / 1e-14 ATGOLS7 galactinol synthase 7 (.1) AT1G60470 75 / 2e-14 ATGOLS4 galactinol synthase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G187900 [exp] 126 / 1e-30 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.005G061600 [exp] 120 / 1e-28 AT3G18660 863 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.007G107200 [exp] 119 / 4e-28 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.014G029900 [exp] 118 / 4e-28 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.003G076800 [exp] 114 / 5e-27 AT4G16600 633 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.001G158000 [exp] 108 / 3e-25 AT4G16600 678 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G033500 [exp] 109 / 4e-25 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G022900 [exp] 108 / 1e-24 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.008G189400 [exp] 73 / 6e-14 AT1G60470 545 / 0.0 galactinol synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027949 [exp] 605 / 0 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000818 [exp] 389 / 1e-132 AT5G18480 355 / 7e-120 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 323 / 2e-108 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1) Lus10018922 [exp] 125 / 5e-30 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 124 / 6e-30 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10020890 [exp] 121 / 9e-29 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10033485 [exp] 120 / 1e-28 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10004717 [exp] 108 / 6e-25 AT4G16600 673 / 0.0 Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10021731 [exp] 107 / 2e-24 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 105 / 1e-23 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.013G049100.5 pacid=42811972 polypeptide=Potri.013G049100.5.p locus=Potri.013G049100 ID=Potri.013G049100.5.v4.1 annot-version=v4.1 ATGAAGTTATTAAAACTAGTTGCTCTATTTACACTATTCTCGTTGAATCTAATAAGCTATACATGTCTCGCTGCTTCGATTCAGAGATCGCAGAGAACAG AGGAGGCTTACGTTACGTTGTTATACGGAGATGAGTTTTTATTGGGAGTTAGGGTTTTGGGGAAATCAATTAGAGATACTGGATCCACCAAAGATATTGT CGTTTTAGTCTCTGATGGTGTCTCTGATTATGCCAAGAAGCTTTTACTGGCTGATGGGTGGATAGTGGAGAAAATCAGCTTATTGGCGAATCCTAATCAA GTTCGGCCGAAGAGGTTTTGGGGTGTATATACTAAACTAAAAATCTTTAACATGACTAACTACAAAAAAGTTGTATATCTTGATGCGGATACTATTGTGG TCAAAAGCATTGAGGATCTTTTCAAGTGTGCGAAATTCTGTGCCAATCTGAAGCATTCAGAAAGGTTAAATTCAGGAGTCATGGTGGTGGAACCATCTGA AACAGTTTTCAATAACATGATGAGCAAAGTAACCACTTTGCCCTCTTACACGGGAGGAGATCAGGGGTTTCTCAACTCCTATTATGAAGAATTTCCAAAT GCACATGTTTTCCAACCTGGTTTACCTGAGGAAGTACGGAAAAGTAGACCTGTACCTGATATGGAGCGGCTCTCTACTTTATATAATGCAGATGTTGGTC TTTACATGCTTGCTAACAAGTGGATGGTAGATGAGAATGAACTCCGTGTTATTCACTATACACTTGGGCCCCTCAAACCTTGGGACTGGTGGACATCTTG GCTTTTAAAACCTGTTGATGTCTGGCAGAGAGTCAGGGAACAGCTTGATGAGTCCCTTCCTGGAACTGGAGGTGGAAAAAATCCAAAAGATGAACTTCTT GTCAAAGTTCTTTTCTTGTTACCATTATGTCTTGTACTTCTCTGTTACTACCGCTCTTTTCTTCAGACAAGGGCATTCTGTAGAGGTTCATTATGTGATC ATATTAGACACCTCTATTACAAAATAAGATCAAACGGACCACTTGCTTACACTGGTATTTCTTCATCATCTGCTGGCAATTCCACCTATCAATTCTCCAA TGACGCACAGTCCAAGGTGCCAGCGTATTTGGGTGGAGTTTCCATCTTCATGTGTTTTATGGCTCTTTTGATCGCCCTCGGGTTTGGTCTTTCAATTGTG CCTCGGCAAGTGATGCCCTGGACTGGTTTGCTCTTGATGTATGAGTGGACATTCACAATCTTCTTCCTTTTATTTGGAGGCTTTCTCCACTTGATCTATA TATGGGGAAAGAGGATGGCAACTCAAGCTGCATCACTTTCTCCTCATTCTGAATCTTTGGCATATGATTCTAGAAAAGGTCATCGGCAGGGGTCAACTTG CGATGTTGCTGCATGGTACTATGGTTTAGGGATGGCTTTGTTGGCTGTTGGTGCCCCTTCATTACCTTGTATTTTTGGTGTTACTGCTCTATTTTTGAGG TTAGGGTTGATGGTTGCTGGAGGCCTGGTTTTAGCATCTTTCATGACGTATGCTTCAGAACATCTTGCAATCAGATCATTTTTGAAAGGCTTTGAAGACC GGGACACAGCACGAGCTAGGAACGAATGTTTCTTATTTTGA
AA sequence Show only first row Show all	>Potri.013G049100.5 pacid=42811972 polypeptide=Potri.013G049100.5.p locus=Potri.013G049100 ID=Potri.013G049100.5.v4.1 annot-version=v4.1 MKLLKLVALFTLFSLNLISYTCLAASIQRSQRTEEAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDIVVLVSDGVSDYAKKLLLADGWIVEKISLLANPNQ VRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVVKSIEDLFKCAKFCANLKHSERLNSGVMVVEPSETVFNNMMSKVTTLPSYTGGDQGFLNSYYEEFPN AHVFQPGLPEEVRKSRPVPDMERLSTLYNADVGLYMLANKWMVDENELRVIHYTLGPLKPWDWWTSWLLKPVDVWQRVREQLDESLPGTGGGKNPKDELL VKVLFLLPLCLVLLCYYRSFLQTRAFCRGSLCDHIRHLYYKIRSNGPLAYTGISSSSAGNSTYQFSNDAQSKVPAYLGGVSIFMCFMALLIALGFGLSIV PRQVMPWTGLLLMYEWTFTIFFLLFGGFLHLIYIWGKRMATQAASLSPHSESLAYDSRKGHRQGSTCDVAAWYYGLGMALLAVGAPSLPCIFGVTALFLR LGLMVAGGLVLASFMTYASEHLAIRSFLKGFEDRDTARARNECFLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Potri.013G049100 [exp]	0	1
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.015G068300 [exp]	1.41	0.6876	VFPP2.2
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Potri.010G038400 [exp]	2.23	0.6625	ALPHA.8
AT5G61340			unknown protein		Potri.004G102800 [exp]	6.00	0.6682
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	10.67	0.5849	Pt-TOPP1.1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.010G152600 [exp]	10.95	0.7069	Pt-ARF1.6
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	31.41	0.5875
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Potri.005G100500 [exp]	42.14	0.6475
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.010G232400 [exp]	67.82	0.5482
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.002G154400 [exp]	76.36	0.5754
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	108.24	0.5809

Compare expression of checked genes

Potri.013G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.