Plant FIBer expression Database

Potri.013G049300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G32470 766 / 0 Haem oxygenase-like, multi-helical (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G022700
[exp]
1032 / 0 AT5G32470 756 / 0.0 Haem oxygenase-like, multi-helical (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042514
[exp]
848 / 0 AT5G32470 727 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021977
[exp]
847 / 0 AT5G32470 728 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10027948
[exp]
789 / 0 AT5G32470 700 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10000819
[exp]
635 / 0 AT5G32470 575 / 0.0 Haem oxygenase-like, multi-helical (.1)
Lus10021976
[exp]
93 / 5e-22 AT5G32470 94 / 3e-23 Haem oxygenase-like, multi-helical (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0230 HO PF03070 TENA_THI-4 TENA/THI-4/PQQC family
CL0137 HAD PF12710 HAD haloacid dehalogenase-like hydrolase
Representative CDS sequence
>Potri.013G049300.2 pacid=42810843 polypeptide=Potri.013G049300.2.p locus=Potri.013G049300 ID=Potri.013G049300.2.v4.1 annot-version=v4.1
ATGGCAATCCCTCCGAGATTGATAGCATCATCATCATCATCTTGCACTACAACATCAACCAACAACAGTAGCATTCACATTGAAGAGGGTCTTGCTAGTA
AATTCTGGATCAAGTTTAGGAGAGAATCTGTTTTTTCTATGTACACCCCTTTTATCATCTCTTTGGCTTCTGGCACTCTCAAGATTGATTCTTTTAGGCA
ATATCTCTCTCAAGATTCTCACTTTCTCAAATCTTTTGCTCATGCGTTTGAATTGGCAGAAGAGTGTGCTGATGATGATGAAGCAAAGCTAGCAACCTCT
GAGTTGAGGAAGGGTGTCTTAGAGGAGCTAAAGATGCAAAATTCATTCGTTCAGGAATGGGGTACAGACCCAGGTAAAGAGAGGACTGTCAATTCTGCAA
CGGTTAAATACACAGATTTCTTGTTGGCTACAGCCTCTGGGAAGGTTGAAGGAGTGAAAGGTCCTGGTAAACTTGCAACTCCATTTGAAAGAACAAAAGT
TGCAGCCTATACTCTGGCTGCCATGACACCTTGCATGCGGCTGTATTCGTTTCTTGGCAAGGAGCTCCAGGCACTTCTAGATCCAGAGGATGACAGGCAC
CCTTACAAGAAGTGGATTGACAGTTATTCATCTGAGAGTTTTCAGGCATCAGCTCTGCAAACCGAAGACTTGCTGGATAAACTTAGTGTCTCCTTGACAA
GCGAGGAGCTTGACATCATTGAAAAGCTTTATCACCAAGCCATGAAACTTGAAATAGATTTCTTCCTTGCGCAGCCACTTGCTCAGCCAACTGTAGCTCC
CCTTACAAAAGGGCATAACCCTGCAGAAGATCGGCTTGTCATATTTTCTGATTTTGATTTGACATGCACTGTCGTTGACTCTTCTGCCATTTTGGCAGAG
ATTGCAATAGTAACAGCACCAAAATCTGATGTGGTTCAAAGTGAGGCTCAAATTGCTCGGATGTCATCAGCTGATCTGAGAAACACATGGGATCTTCTTT
CTGGACAGTACACTGAAGAGTACGAGCAATGTATTGAAAGCATTATGCCATCTAAAAAAGTGGAGTTCAACTATGAAGCTCTTTGTAAAGCTCTTGAACA
ACTTTTAGACTTTGAGAGAAGGGTAAATTCTAGAGTGATTGAGTCTGAAGTTCTTAAGGGTTTGAATCTTGAAGATGTAAAACGAGCTGGTGAACGTTTG
ATTCTTCAGGATGGCTGCACTAGTTTCTTTCAGAAAATTGTGAATAATGAAAATTTGAACACTAATGTCCATGTGCTCTCATACTGCTGGTGTGGTGATC
TCATCAGATCAGCTTTTTCTTCAGGGGGTTTGGATGTGAATGTACATGCGAACGAGTTAATTTTCGATGAATCAATCTCCACAGGGGAGATTGTTAAGAA
GGTGGAATCTCCCTTGGACAAAGCTCAAGCTTTCAATGATATTTTAAAGAATTACAGCAATGACAGAAAGAACTTGACTGTTTACATTGGAGATTCAGTT
GGTGACTTGCTTTGTCTACTTAAAGCAGATATTGGTATTGTAGTTGGATCAAGTGCAAGTTTAAGGAAAGTGGGAAGTCAATTTGGTGTTTCTTTTGTAC
CACTGTTCCCTGGCTTGGTGAGAAAACAGAAAGAATCTGACGGAGAAAGCTCTCCTAATTGGAAAGGGCTATCGGGCATACTGTATACAGTCTCTAGTTG
GGCTGAAATACATGCCTTCATTTTGGGGTGGTAG
AA sequence
>Potri.013G049300.2 pacid=42810843 polypeptide=Potri.013G049300.2.p locus=Potri.013G049300 ID=Potri.013G049300.2.v4.1 annot-version=v4.1
MAIPPRLIASSSSSCTTTSTNNSSIHIEEGLASKFWIKFRRESVFSMYTPFIISLASGTLKIDSFRQYLSQDSHFLKSFAHAFELAEECADDDEAKLATS
ELRKGVLEELKMQNSFVQEWGTDPGKERTVNSATVKYTDFLLATASGKVEGVKGPGKLATPFERTKVAAYTLAAMTPCMRLYSFLGKELQALLDPEDDRH
PYKKWIDSYSSESFQASALQTEDLLDKLSVSLTSEELDIIEKLYHQAMKLEIDFFLAQPLAQPTVAPLTKGHNPAEDRLVIFSDFDLTCTVVDSSAILAE
IAIVTAPKSDVVQSEAQIARMSSADLRNTWDLLSGQYTEEYEQCIESIMPSKKVEFNYEALCKALEQLLDFERRVNSRVIESEVLKGLNLEDVKRAGERL
ILQDGCTSFFQKIVNNENLNTNVHVLSYCWCGDLIRSAFSSGGLDVNVHANELIFDESISTGEIVKKVESPLDKAQAFNDILKNYSNDRKNLTVYIGDSV
GDLLCLLKADIGIVVGSSASLRKVGSQFGVSFVPLFPGLVRKQKESDGESSPNWKGLSGILYTVSSWAEIHAFILGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G32470 Haem oxygenase-like, multi-hel... Potri.013G049300
[exp]
0 1
AT2G17220 Kin3 kinase 3, Protein kinase super... Potri.018G138900
[exp]
7.48 0.8267
AT4G38050 Xanthine/uracil permease famil... Potri.007G011400
[exp]
9.27 0.8501
AT4G19180 GDA1/CD39 nucleoside phosphata... Potri.004G236900
[exp]
10.09 0.8398
AT4G20300 Protein of unknown function (D... Potri.003G157500
[exp]
10.95 0.7914
AT1G33470 RNA-binding (RRM/RBD/RNP motif... Potri.019G068400
[exp]
20.92 0.8269
AT4G22840 Sodium Bile acid symporter fam... Potri.003G117300
[exp]
36.19 0.8242
AT1G79620 Leucine-rich repeat protein ki... Potri.016G144100
[exp]
37.24 0.8087
AT2G38080 ATLMCO4, IRX12,... LACCASE 4, IRREGULAR XYLEM 12,... Potri.006G096900
[exp]
42.42 0.8175 LAC1c,Pt-LAC2.3
AT3G51050 FG-GAP repeat-containing prote... Potri.005G118300
[exp]
45.89 0.7769
AT5G16210 HEAT repeat-containing protein... Potri.004G095900
[exp]
47.83 0.8016

Potri.013G049300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.