Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09570 430 / 1e-148 Lung seven transmembrane receptor family protein (.1) AT5G18520 430 / 2e-148 Lung seven transmembrane receptor family protein (.1) AT5G42090 400 / 6e-137 Lung seven transmembrane receptor family protein (.1) AT5G02630 345 / 3e-115 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081300 [exp] 413 / 8e-142 AT5G18520 609 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G214900 [exp] 404 / 2e-138 AT5G18520 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G147700 [exp] 399 / 2e-136 AT5G42090 639 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.001G083100 [exp] 396 / 2e-135 AT5G42090 642 / 0.0 Lung seven transmembrane receptor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000821 [exp] 496 / 5e-174 AT5G18520 409 / 6e-140 Lung seven transmembrane receptor family protein (.1) Lus10025283 [exp] 420 / 5e-144 AT5G18520 697 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10008267 [exp] 401 / 4e-137 AT5G42090 690 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10009065 [exp] 361 / 7e-122 AT5G18520 626 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10033235 [exp] 333 / 1e-112 AT5G42090 520 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [poplar] [flax] GPCR_A PF06814 [poplar] [flax] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Potri.013G049500.2 pacid=42811567 polypeptide=Potri.013G049500.2.p locus=Potri.013G049500 ID=Potri.013G049500.2.v4.1 annot-version=v4.1 ATGAGATTTTATAATTCCTCTAAAAATCTTCATCATCATCCCCCCACACTATTACTGATCTTGTACGCGTTGTTCTTAACTTCAAGCATCCCATTTGCTT CATCCGAAATCAAAGACACATATATTTTTGATGATTCTCGTCCCATTATCATGTTTGAGCAATTTGGTTTCACAGAAGGTGGTCGGGTAGCCATTTCCAT AAAAGACGTCTCTTGGAAATCAAGAAGTCGAAAGGCAGAACTTAACCCTTCTTCCATGGGATTTTTCCTGGCTAGAGACTCTTCCTTCTCAACAATATTC ACGAATGACTCACTGCAAAGTAAAGATGAAAGCTTTTGTGTTCTGTCTAGCCGGTATGTAAAGCTCTTGTTCAATTTCAATGACCTTAGCATGAATACGT CAGCTTATAATGGCTCTGCATTTATTGATGAGGCTGATGAATATAGCTTGGTATTTGGAAATTGCCAGCCAGAATTTGAAGTGTCAATGTATGTACATAC CGAGATGTATAACTTACAAGATGGTGCAAAAAATTTCCTTCCTATAGGACAAACCTTTCTGCCAAAATTTTTTCTCTCAATGTTTCTCATTTATACTTGC TTTTTTGGGATATGGAGTTTTGTTTGCTTCAAACAGAGACCAACAGTTGACATGATCCACCTAATAATGGGGGCGTTGCTTTTTGTCAAGGCACTTAAAA TGATATGTGCGTCTGAGGACGAAATGTATGTGAGCAAAACTGGTACTCCTCATGGCTGGGATGTAGCGTTCTATATTTTTGGATTCTTCAAGGGCATAAT GTTATTCACTGTGATCATCCTTATAGGCACTGGTTGGTCATTCTTGAAACCATACCTTCAAGAACGCGAAAAGAATGTTTTGATGATAGTAATTCCCTTG CAAGTTCTTGAAAACATAGCTTATGTTGTTATCAGTGAAACTGGGCCAGCAACCAAGGATTGGTGGACCTGGAACCAAATCTTCTTGTTGATCGATGTCA TATGCTGCTGCGCTGTGTTTTTCCCGATCGTTTGGTCGATTCGAAATCTGAAAGAGGCATCAAAATCGGATGGAAAGGCTGCTCGGAACCTGGAAAAGTT AACCCTTTTCAAGAATTTCTACATTTGTCTGGTGATGTATTTGTATTTCACAAGAGTTGTCGTTTCTTCTATGGAGGGTATTTTGGATTATAGATATGAA GGGTTTACGTATGTTCTTTCTGAAGGTGCAAGCCTGGCTTTCTATGTGTTCATATTCTACAATTTTCAGCCCACGGAAAGGAACCCATACTTGGTGATTG ATGAAGAGGAAGAGCTCGCTGCAGAACAAATATTGCAAGATGATGACTCCTTTGAACTGTAA
AA sequence Show only first row Show all	>Potri.013G049500.2 pacid=42811567 polypeptide=Potri.013G049500.2.p locus=Potri.013G049500 ID=Potri.013G049500.2.v4.1 annot-version=v4.1 MRFYNSSKNLHHHPPTLLLILYALFLTSSIPFASSEIKDTYIFDDSRPIIMFEQFGFTEGGRVAISIKDVSWKSRSRKAELNPSSMGFFLARDSSFSTIF TNDSLQSKDESFCVLSSRYVKLLFNFNDLSMNTSAYNGSAFIDEADEYSLVFGNCQPEFEVSMYVHTEMYNLQDGAKNFLPIGQTFLPKFFLSMFLIYTC FFGIWSFVCFKQRPTVDMIHLIMGALLFVKALKMICASEDEMYVSKTGTPHGWDVAFYIFGFFKGIMLFTVIILIGTGWSFLKPYLQEREKNVLMIVIPL QVLENIAYVVISETGPATKDWWTWNQIFLLIDVICCCAVFFPIVWSIRNLKEASKSDGKAARNLEKLTLFKNFYICLVMYLYFTRVVVSSMEGILDYRYE GFTYVLSEGASLAFYVFIFYNFQPTERNPYLVIDEEEELAAEQILQDDDSFEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18520			Lung seven transmembrane recep...		Potri.013G049500 [exp]	0	1
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.004G150900 [exp]	8.94	0.5529
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.014G099600 [exp]	21.90	0.5148
AT1G05580		ATCHX23	cation/H+ exchanger 23, cation...		Potri.007G111400 [exp]	27.11	0.4990	ATCHX23.1
					Potri.010G080267 [exp]	28.14	0.5644
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024750 [exp]	67.61	0.5124
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	160.79	0.4333
					Potri.016G115250 [exp]	234.77	0.4306
AT3G54700		PHT1;7	phosphate transporter 1;7 (.1)		Potri.005G175500 [exp]	276.98	0.4259	Pt-PT2.7,PtrPht1-6
					Potri.017G069350 [exp]	293.47	0.4184

Compare expression of checked genes

Potri.013G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.