Plant FIBer expression Database

Potri.013G049925 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13510 258 / 3e-84 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
AT3G24300 253 / 4e-82 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1)
AT3G24290 251 / 2e-81 AMT1;5 ammonium transporter 1;5 (.1)
AT4G28700 246 / 2e-79 AMT1;4 ammonium transporter 1;4 (.1)
AT1G64780 235 / 7e-75 ATAMT1;2 ammonium transporter 1;2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G023600
[exp]
296 / 1e-98 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1)
Potri.010G063500
[exp]
259 / 2e-84 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Potri.002G255000
[exp]
251 / 1e-81 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Potri.008G173800
[exp]
251 / 3e-81 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Potri.002G255100
[exp]
241 / 3e-77 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1)
Potri.009G045200
[exp]
172 / 2e-51 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003096
[exp]
286 / 4e-99 AT3G24300 301 / 4e-101 ammonium transporter 1;3 (.1)
Lus10004761
[exp]
240 / 1e-81 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1)
Lus10004403
[exp]
243 / 2e-78 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Lus10023705
[exp]
240 / 5e-77 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1)
Lus10018229
[exp]
176 / 1e-52 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00909 Ammonium_transp Ammonium Transporter Family
Representative CDS sequence
>Potri.013G049925.1 pacid=42810701 polypeptide=Potri.013G049925.1.p locus=Potri.013G049925 ID=Potri.013G049925.1.v4.1 annot-version=v4.1
ATGATTTACACTACCCTCTTTGCTCTCTGTATATATGTTCTCATACCCAACCCTCCTCTCTTCCATAACCTTTGGCTCATCTCTCTCTCCACTTCCACCA
TGGCCTGCTCAGCCTCAGACCTAGCTCCTCTCCTCTCCACCACTGTGAACTCCACAGAAGCTGCCACCTACTTATGCTCCCAGTTCGGCAGCATAGCCAA
CCAGCTCTCAGACACAACCTATGCAGTCAACAACACTTATCTCCTTTTCTCTGCCTACCTGGTCTTTGCTATGCAACTTGGCTTTGCAATGCTTTGTGCT
GGCTCTGTGAGGGCCAAGAACACCATGAACATAATGCTCACTAATGTTCTTGATGCTGCTGCTGGTGGCCTTTCTTACTATCTCTTTGGCTATGCTTTTT
CCTTCGGCTCTCCTAGCAATGGTTTCATTGGCCGCCATTTCTTTGGTTTGAGAGAGTTTCCTTCTTCTCAAGCCGACTATAGTTTCTTCCTTTATCAATG
GGCTTTTGCTATAGCTGCTGCTGGCATCACTAGTGGCTCCATCGCTGAGAGAACCCAATTCGTTGCTTACCTCATATACTCCTCCTTTTTAACTGGCTTT
GTTTACCCGGTTGTTTCCCATTGGTTCTCTCCATCGCTGAGAGAACCCAATTCGTTGGGCCAGTCCGGTTAA
AA sequence
>Potri.013G049925.1 pacid=42810701 polypeptide=Potri.013G049925.1.p locus=Potri.013G049925 ID=Potri.013G049925.1.v4.1 annot-version=v4.1
MIYTTLFALCIYVLIPNPPLFHNLWLISLSTSTMACSASDLAPLLSTTVNSTEAATYLCSQFGSIANQLSDTTYAVNNTYLLFSAYLVFAMQLGFAMLCA
GSVRAKNTMNIMLTNVLDAAAGGLSYYLFGYAFSFGSPSNGFIGRHFFGLREFPSSQADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGF
VYPVVSHWFSPSLREPNSLGQSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13510 ATAMT1;1, AMT1;... ARABIDOPSIS THALIANA AMMONIUM ... Potri.013G049925
[exp]
0 1
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.013G019500
[exp]
1.41 0.9928
AT4G19690 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRA... Potri.015G117900
[exp]
7.34 0.9867 Pt-ZIP6.4
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.005G181000
[exp]
8.71 0.9857
AT3G12900 2-oxoglutarate (2OG) and Fe(II... Potri.005G097900
[exp]
9.74 0.9856
AT5G04950 ATNAS1 ARABIDOPSIS THALIANA NICOTIANA... Potri.004G193400
[exp]
9.79 0.9840
AT1G12100 Bifunctional inhibitor/lipid-t... Potri.001G121800
[exp]
10.81 0.9825
AT1G80830 ATNRAMP1, PMIT1... natural resistance-associated ... Potri.005G181100
[exp]
10.95 0.9851 Pt-NRAMP1.4
AT2G28160 bHLH ATFIT1, ATBHLH2... ARABIDOPSIS FE-DEFICIENCY INDU... Potri.009G005600
[exp]
13.41 0.9753
AT3G13610 2-oxoglutarate (2OG) and Fe(II... Potri.001G006800
[exp]
13.78 0.9821
AT2G21610 PE11, ATPE11 A. THALIANA PECTINESTERASE 11,... Potri.004G156300
[exp]
13.96 0.9816

Potri.013G049925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.