Plant FIBer expression Database

Potri.013G050400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38890 293 / 2e-102 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004763
[exp]
304 / 7e-107 AT5G38890 255 / 4e-88 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10003098
[exp]
297 / 4e-104 AT5G38890 249 / 2e-85 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF10447 EXOSC1 Exosome component EXOSC1/CSL4
CL0021 PF14382 ECR1_N Exosome complex exonuclease RRP4 N-terminal region
Representative CDS sequence
>Potri.013G050400.1 pacid=42812407 polypeptide=Potri.013G050400.1.p locus=Potri.013G050400 ID=Potri.013G050400.1.v4.1 annot-version=v4.1
ATGCAAGAAGAAGGAGAGATGGCGACACCAGGAGAAGTATTAGGCAAAGCAACAGAACTAAAAGCAGGAAAAGGAGCCTACATAGGATCATATCGCGACA
CTGATATACAATACGTCTTCTCTTCTCTCACTGGTCTCCGCCGCACTCTATCTCCTTCTCCTGACTCTCCTGACCAGAGACCAACTGTTGAAGTAACTGG
ACACAAGGCACATGGTGCTGTTCCGGAGCCTGGATCTGTTGTTATTGCCAGAGTTACTAAAGTGATGGCAAAAACAGCTTCGGCTGATATTATGTGTGTT
GGTCCTAAGTCTGTGCAAGAGAAGTTTACTGGCATAATTAGACAACAAGATGTAAGAGCAACTGAGATTGACAAAGTGGATATGCATTTATCATTTCGGC
CTGGTGACATCGTCAGAGCTCTTGTTCTATCACTTGGAGATGCACGAGCTTATTATCTTTCAACTGCGAAGAATGAATTAGGTGTTGTGTCTGCAGAGAG
CGCAGCTGGTGCAACAATGGTTCCCATAAGTTGGACAGAGATGCAATGCCCATTGACAGGCCAAATTGAGCAAAGAAAAGTCGCCAAGGTTGGAAGTTGA
AA sequence
>Potri.013G050400.1 pacid=42812407 polypeptide=Potri.013G050400.1.p locus=Potri.013G050400 ID=Potri.013G050400.1.v4.1 annot-version=v4.1
MQEEGEMATPGEVLGKATELKAGKGAYIGSYRDTDIQYVFSSLTGLRRTLSPSPDSPDQRPTVEVTGHKAHGAVPEPGSVVIARVTKVMAKTASADIMCV
GPKSVQEKFTGIIRQQDVRATEIDKVDMHLSFRPGDIVRALVLSLGDARAYYLSTAKNELGVVSAESAAGATMVPISWTEMQCPLTGQIEQRKVAKVGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G38890 Nucleic acid-binding, OB-fold-... Potri.013G050400
[exp]
0 1
AT5G56940 Ribosomal protein S16 family p... Potri.004G217400
[exp]
2.00 0.8084 Pt-RPS16.2
AT4G26410 Uncharacterised conserved prot... Potri.001G001300
[exp]
2.00 0.7915
AT5G47630 MTACP3 mitochondrial acyl carrier pro... Potri.006G005700
[exp]
5.19 0.7929
AT5G58005 Cytochrome c oxidase, subunit ... Potri.006G186500
[exp]
9.79 0.7223
AT1G02280 PPI1, ATTOC33, ... PLASTID PROTEIN IMPORT 1, tran... Potri.002G183400
[exp]
9.89 0.7470 Pt-PPI1.3
AT2G35795 Chaperone DnaJ-domain superfam... Potri.006G131200
[exp]
10.81 0.7578
AT1G07830 ribosomal protein L29 family p... Potri.014G111100
[exp]
13.26 0.7425
AT1G22970 unknown protein Potri.008G126400
[exp]
13.60 0.7047
AT4G35490 MRPL11 mitochondrial ribosomal protei... Potri.007G058600
[exp]
15.29 0.7665
AT5G35530 Ribosomal protein S3 family pr... Potri.012G076800
[exp]
15.49 0.7589

Potri.013G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.