Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18470 228 / 9e-72 Curculin-like (mannose-binding) lectin family protein (.1) AT3G16030 95 / 2e-21 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT2G19130 92 / 2e-20 S-locus lectin protein kinase family protein (.1) AT4G21390 90 / 1e-19 B120 S-locus lectin protein kinase family protein (.1) AT1G67520 87 / 1e-18 lectin protein kinase family protein (.1) AT4G27290 84 / 1e-17 S-locus lectin protein kinase family protein (.1) AT1G61610 80 / 3e-16 S-locus lectin protein kinase family protein (.1) AT4G11900 79 / 5e-16 S-locus lectin protein kinase family protein (.1) AT1G11340 76 / 4e-15 S-locus lectin protein kinase family protein (.1) AT4G03230 73 / 4e-14 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G414077 [exp] 114 / 4e-28 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 114 / 7e-28 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 106 / 3e-25 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 105 / 6e-25 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014900 [exp] 104 / 1e-24 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 100 / 5e-23 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 98 / 2e-22 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 98 / 2e-22 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412454 [exp] 96 / 2e-22 AT4G27290 316 / 9e-102 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003099 [exp] 278 / 3e-91 AT5G18470 296 / 4e-97 Curculin-like (mannose-binding) lectin family protein (.1) Lus10004765 [exp] 123 / 4e-34 AT5G18470 108 / 3e-28 Curculin-like (mannose-binding) lectin family protein (.1) Lus10039731 [exp] 109 / 3e-26 AT1G11300 1112 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10039767 [exp] 100 / 3e-23 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10039733 [exp] 100 / 5e-23 AT4G27290 615 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10028782 [exp] 99 / 1e-22 AT4G21380 649 / 0.0 receptor kinase 3 (.1) Lus10018516 [exp] 97 / 5e-22 AT1G11300 699 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10024064 [exp] 97 / 6e-22 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 94 / 5e-21 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 94 / 6e-21 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain
Representative CDS sequence Show only first row Show all	>Potri.013G050500.2 pacid=42812641 polypeptide=Potri.013G050500.2.p locus=Potri.013G050500 ID=Potri.013G050500.2.v4.1 annot-version=v4.1 ATGGCTTGTGCAATCTTCATTCTCCTCGTCACCATTTTCTCTTTCTTAAGCTCCAACTATATATGCCAGCAGCTCCGGGACTATGAGCAGCTAATTTCTG CTGGAGGGGTCTTCAGGTTGGGATTCTTTAGCCCCAACCCGAATGCAGGCTTGATCGGTACTGCTGGTGCAAGGTACCTGGGAATATGGTTTGAACATTT ACCAGTTTATTCAGTATGGGTGGCCAACCGACCGAGACATCCCAATCACATACCAGGAGGCCCACCGATAGTTATAAACTCAAATGTTGAATCAGCAAAA AAATCAAGTGGCGGTATTATTGCCACCCTGCTTGATTCCGGAAACCTTGTCGTGCGACAGGTTGATTCTGATGGCACACCAGCCACCAGGAACTGTTTTG TGGCAGAGTATGAATCACAAGACTGGACACTTACTTCATGGTTGAGTGAAAAAGTTCCTGCTCCTGGTGCGTTCAGGCTAGGCCTGGATCCAAGTGGTGC TAATCAGTTACTTGTTTGGCGGCGAGATGAGATTCACTGGTCAAGTGGTGTGTGCCTGAACGGAAGTTTTCAATCAGCACCTGAGCTAACTCAATTGACA AAAGGATATAATATATATGATTTCAGATTTGTGGCAAATGAGGAGGAAACGTATTTCTCCTATTCTATTAAGGAGAGGTCTATTTTATCTAGGTGGGACT TGGACACTTTGGGTGAAGTTACACTGTTGACTGTGGACAGACGAGATGGTAATAATCGCTGGACATTTGAGACTTCTGGTGCATGCCATAATGGTTTCAA GAATTCAACTTCAGTTTGCCTAACTGAAAAGCCAACTAAGTGCAGGAATGGTACTCAATCTTTTGTGCCGAAGAGAGGGTATATCGATGTGTCAGAGATA TGGTATGATACTGACACAAACTTGGCTCTCAGTACGTGA
AA sequence Show only first row Show all	>Potri.013G050500.2 pacid=42812641 polypeptide=Potri.013G050500.2.p locus=Potri.013G050500 ID=Potri.013G050500.2.v4.1 annot-version=v4.1 MACAIFILLVTIFSFLSSNYICQQLRDYEQLISAGGVFRLGFFSPNPNAGLIGTAGARYLGIWFEHLPVYSVWVANRPRHPNHIPGGPPIVINSNVESAK KSSGGIIATLLDSGNLVVRQVDSDGTPATRNCFVAEYESQDWTLTSWLSEKVPAPGAFRLGLDPSGANQLLVWRRDEIHWSSGVCLNGSFQSAPELTQLT KGYNIYDFRFVANEEETYFSYSIKERSILSRWDLDTLGEVTLLTVDRRDGNNRWTFETSGACHNGFKNSTSVCLTEKPTKCRNGTQSFVPKRGYIDVSEI WYDTDTNLALST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	0	1
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	1.73	0.9625
					Potri.013G111566 [exp]	3.46	0.9527
AT1G74220			unknown protein		Potri.015G057200 [exp]	4.47	0.9009
AT1G24140			Matrixin family protein (.1)		Potri.013G033200 [exp]	7.93	0.9008
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	8.66	0.9326
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G094100 [exp]	9.16	0.8916
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152900 [exp]	11.66	0.9343
					Potri.013G111632 [exp]	12.00	0.9192
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041900 [exp]	12.72	0.8931
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Potri.005G214100 [exp]	13.85	0.9052

Compare expression of checked genes

Potri.013G050500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.