Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63930 1282 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 1195 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 984 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G48940 624 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24240 611 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G56040 590 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 588 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 582 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 560 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G73080 556 / 9e-180 ATPEPR1, PEPR1 PEP1 receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025500 [exp] 1711 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 1307 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 1305 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.011G139700 [exp] 986 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 599 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.005G198000 [exp] 597 / 0 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 593 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G080800 [exp] 590 / 0 AT5G56040 1019 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G258400 [exp] 589 / 0 AT1G35710 681 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 1009 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011761 [exp] 832 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 632 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 600 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10036251 [exp] 576 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10018911 [exp] 553 / 1e-178 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10028612 [exp] 552 / 2e-178 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10003612 [exp] 551 / 2e-177 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10036242 [exp] 545 / 6e-177 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 541 / 4e-175 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G051300.2 pacid=42811886 polypeptide=Potri.013G051300.2.p locus=Potri.013G051300 ID=Potri.013G051300.2.v4.1 annot-version=v4.1 ATGGAGAGAATATCATATAGCATGCTCACTGTATTTGTTATTTCCCTTTCGTTTCACCAGTCCATGGGGCTAAATGCTGAGGGACAATACCTCTTGGATA TAAAGAGTAGAATTGGTGACGCCTATAACCATCTTAGCAACTGGAATCCTAATGATTCCACTCCTTGTGGATGGAAAGGTGTGAATTGCACCAGTGATTA CAATCAAGTAGTTTGGCGTCTTGATTTGAATTCAATGAATCTTTCCGGTTCTTTATCACCAAGTATAGGTGGATTGGTTCATCTGACACTTCTTAATGTT TCTTTTAATTTCTTGTCCAAAAATATACCTAGCGAGATTGGAAACTGTTCAAGTTTGGAGGTTCTTTATCTGGACAATAACCTTTTTGTAGGCCAGCTCC CTGTAGAATTAGCTAAGCTTTCCTGTTTGACAGATTTGAATATAGCCAACAACAGAATATCAGGGCCCCTTCCTGATCAGATAGGAAACCTTTCCTCTCT GTCACTATTGATTGCATATAGTAATAACATCACTGGTCCATTGCCTGCTTCTCTTGGCAACCTTAAGAACTTGAGGACTTTTAGGGCAGGGCAGAATTTG ATATCGGGAAGCTTACCCTCAGAGATAGGTGGATGTGAGAGTTTGGAATATCTTGGTCTTGCACAAAATCAGTTAAGTGAAGAAATACCAAAAGAAATTG GAATGCTTCAGAATTTGACAGATTTGATCCTTTGGTCTAATCAGCTTTCTGGGTCTATTCCAGAGGAGCTGGGCAATTGCACCAATTTGGGGACCCTCGC TCTCTACCATAACAAACTTGAGGGGCCTATGCCCCAGGAACTTGGTAATCTTTTATTTCTCAGGAAGTTATACCTCTACGGAAATAACTTGAATGGAGCA ATCCCAAAAGAAATTGGGAATCTATCTTTTGCAGTGGAGATTGACTTCTCCGAGAATGAGTTGACCGGAGAGATACCAATTGAGCTGACAAAGATATCTG GGCTGCAATTGCTGTATATTTTTGAGAACGAGCTTAACGGTGTCATACCAGATGAGCTCACAACTTTGGAAAACCTGACAAAGCTTGACCTCTCCATCAA TTATCTCTCTGGTACTATTCCTATGGGGTTCCAGCATATGAAGCAACTGGTTATGTTGCAGCTCTTCAACAACTCACTGGGTGGCATCATTCCTCAAGCA CTTGGAGTCTACAGCAAACTTTGGGTGGTTGACTTGTCAAATAACCACTTAACAGGAGAAATCCCGCGGCATCTTTGCAGAAATGAAAACCTGATTTTAC TGAACCTGGGGTCAAACAATCTCACAGGTTATATCCCAACTGGGGTCACAAATTGCAAGCCACTGGTGCAACTTCATCTTGCTGCAAATGGCCTTGTGGG GAGTTTCCCGTCGGGTTTGTGTAAGATGGTGAACCTCTCAAGTTTTGAATTGGATCAGAACAAGTTCACTGGGCCAATTCCTCCAGAGATAGGTCAATGT CATGTTTTGAAAAGGCTGCATCTCTCAGGTAACTATTTTAATGGTGAATTGCCAAGACAGATAGGCAAACTCTCTCAGCTGGTGATTTTTAATGTCTCAT CGAATTTTCTCACCGGAGTGATACCAGCAGAGATTTTTAGCTGCAAGATGCTTCAACGGCTTGATCTCACCAGGAATAGTTTTGTTGGTGCTATACCAAG TGAGATAGGAGCCCTTTCCCAACTCGAGATTCTCATGCTTTCAGAGAATCAACTTTCTGGGAATATACCTGTGGAAGTAGGAAATTTGTCGCGTTTAACT TACTTGCAAATGGGAGGCAACTTATTTTCCGGTGAGATACCAGTTACATTAGGTGGCATTTTGAGCTTGCAGATTGCACTGAATCTTAGTTACAACAATC TCTCTGGGCCAATCCCCACAGAGCTTGGGAATCTTGTGTTGCTGGAATTTCTGCTGCTCAACAACAATCATTTGAGTGGTGAAATCCCAGGCTCCTTTGA GAAATTATCTAGCTTGCTTGGATGCAACTTTTCTAACAATGACTTAACAGGGCCCTTACCTTCCCTGTCACTCTTTCAAAAGACAGGCATCGGCAGCTTT TTTGGGAACAAGGGGCTTTGTGGTGGACCTTTTGGCAATTGTAATGGATCTCCATCTTTTTCGTCTAATCCCTCAGATGCTGAAGGGAGAAGCCTTCGTA TAGGGAAAATCATAGCTATTATTTCAGCAGTCATTGGTGGGATTTCTCTCATTTTAATTTTAGTCATTGTATACTTCATGAGACGTCCTGTCGATATGGT CGCTCCTTTGCAAGATCAATCATCCTCTTCTCCCATTTCAGACATTTACTTTTCCCCCAAGGATGAATTCACTTTCCAGGACTTAGTTGTGGCCACTGAG AATTTTGATGATAGCTTCGTTATAGGAAGAGGAGCCTGTGGAACTGTATATAGGGCAGACTTGCCATGTGGTCGTATCATTGCAGTTAAAAGGCTAGCAT CTAACAGGGAGGGAAGCAATATTGACAATAGTTTCCGTGCTGAAATTCAGACTTTGGGAAATATCAGGCATCGGAATATTGTGAAGCTGTATGGTTTCTG CTACCACCAGGGTTCCAACCTCCTTCTTTATGAATACTTAGCAAAGGGTAGCTTGGGAGAATTGCTCCATGGATCACCCTCTAGTCTTGATTGGCGGACA AGATTCAAGATTGCCCTCGGCTCTGCTCACGGTCTTGCTTATTTGCATCATGATTGCAAGCCTCGAATATTTCATCGTGACATAAAGTCTAATAACATTC TGCTTGATGAAAAATTTGACGCTCGTGTTGGGGACTTTGGACTAGCTAAGGTGATTGACATGCCACATTCAAAATCAATGTCTGCAGTTGCTGGTTCTTA TGGCTATATTGCCCCTGAATATGCATACACTCTGAAAGTCACCGAAAAGTGCGACATATACAGCTACGGAGTAGTCTTACTGGAATTGCTGACTGGCAGA ACACCCGTGCAACCACTAGATCAAGGCGGCGATCTTGTATCATGGGTAAGAAATTACATTCAAGTCCATTCCTTATCACCTGGAATGCTTGATGATCGAG TCAATGTGCAAGATCAGAACACAATCCCTCACATGATTACTGTCATGAAAATTGCTTTACTCTGCACAAGCATGTCTCCTGTTGACAGACCAACAATGCG AGAGGTTGTTTTGATGCTTATTGAGTCTAATAAGCTCGAAGGACACTTAGATTCCTCCTCCTCCTCCTCCTCGCCGAGTCATCATAGTAATTCGAGCGAC GAACTTATTGTACATGTGTAA
AA sequence Show only first row Show all	>Potri.013G051300.2 pacid=42811886 polypeptide=Potri.013G051300.2.p locus=Potri.013G051300 ID=Potri.013G051300.2.v4.1 annot-version=v4.1 MERISYSMLTVFVISLSFHQSMGLNAEGQYLLDIKSRIGDAYNHLSNWNPNDSTPCGWKGVNCTSDYNQVVWRLDLNSMNLSGSLSPSIGGLVHLTLLNV SFNFLSKNIPSEIGNCSSLEVLYLDNNLFVGQLPVELAKLSCLTDLNIANNRISGPLPDQIGNLSSLSLLIAYSNNITGPLPASLGNLKNLRTFRAGQNL ISGSLPSEIGGCESLEYLGLAQNQLSEEIPKEIGMLQNLTDLILWSNQLSGSIPEELGNCTNLGTLALYHNKLEGPMPQELGNLLFLRKLYLYGNNLNGA IPKEIGNLSFAVEIDFSENELTGEIPIELTKISGLQLLYIFENELNGVIPDELTTLENLTKLDLSINYLSGTIPMGFQHMKQLVMLQLFNNSLGGIIPQA LGVYSKLWVVDLSNNHLTGEIPRHLCRNENLILLNLGSNNLTGYIPTGVTNCKPLVQLHLAANGLVGSFPSGLCKMVNLSSFELDQNKFTGPIPPEIGQC HVLKRLHLSGNYFNGELPRQIGKLSQLVIFNVSSNFLTGVIPAEIFSCKMLQRLDLTRNSFVGAIPSEIGALSQLEILMLSENQLSGNIPVEVGNLSRLT YLQMGGNLFSGEIPVTLGGILSLQIALNLSYNNLSGPIPTELGNLVLLEFLLLNNNHLSGEIPGSFEKLSSLLGCNFSNNDLTGPLPSLSLFQKTGIGSF FGNKGLCGGPFGNCNGSPSFSSNPSDAEGRSLRIGKIIAIISAVIGGISLILILVIVYFMRRPVDMVAPLQDQSSSSPISDIYFSPKDEFTFQDLVVATE NFDDSFVIGRGACGTVYRADLPCGRIIAVKRLASNREGSNIDNSFRAEIQTLGNIRHRNIVKLYGFCYHQGSNLLLYEYLAKGSLGELLHGSPSSLDWRT RFKIALGSAHGLAYLHHDCKPRIFHRDIKSNNILLDEKFDARVGDFGLAKVIDMPHSKSMSAVAGSYGYIAPEYAYTLKVTEKCDIYSYGVVLLELLTGR TPVQPLDQGGDLVSWVRNYIQVHSLSPGMLDDRVNVQDQNTIPHMITVMKIALLCTSMSPVDRPTMREVVLMLIESNKLEGHLDSSSSSSSPSHHSNSSD ELIVHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63930			Leucine-rich repeat protein ki...		Potri.013G051300 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Potri.017G153200 [exp]	3.16	0.7637	Pt-ACTI.2
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	4.12	0.8387
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G125700 [exp]	5.29	0.7846	Pt-HMA5.1
AT5G44440			FAD-binding Berberine family p...		Potri.011G157900 [exp]	10.95	0.7362
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	11.31	0.8043
AT2G38600			HAD superfamily, subfamily III...		Potri.016G139700 [exp]	12.48	0.7534
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G125900 [exp]	13.52	0.7938
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Potri.001G220800 [exp]	15.87	0.7595
AT5G09850			Transcription elongation facto...		Potri.019G003900 [exp]	19.20	0.7233
AT1G71960		ATABCG25, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.013G111900 [exp]	19.44	0.7340

Compare expression of checked genes

Potri.013G051300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.