Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11150 350 / 7e-124 TUFF, EMB2448, VHA-E1, TUF embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) AT1G64200 345 / 2e-121 VHA-E3 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1) AT3G08560 303 / 3e-105 VHA-E2 vacuolar H+-ATPase subunit E isoform 2, vacuolar H+-ATPase subunit E isoform 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029200 [exp] 424 / 5e-153 AT4G11150 351 / 5e-124 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Potri.016G139800 [exp] 341 / 3e-120 AT1G64200 325 / 1e-113 vacuolar H+-ATPase subunit E isoform 3, vacuolar H+-ATPase subunit E isoform 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033934 [exp] 377 / 3e-134 AT4G11150 362 / 3e-128 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Lus10032349 [exp] 375 / 1e-133 AT4G11150 363 / 5e-129 embryo defective 2448, vacuolar ATP synthase subunit E1 (.1) Lus10017548 [exp] 332 / 6e-105 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10035604 [exp] 305 / 6e-103 AT1G32070 322 / 8e-109 nuclear shuttle interacting (.1.2.3) Lus10003245 [exp] 302 / 1e-101 AT1G32070 324 / 2e-109 nuclear shuttle interacting (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0255 [poplar] [flax] ATP_synthase PF01991 [poplar] [flax] vATP-synt_E ATP synthase (E/31 kDa) subunit
Representative CDS sequence Show only first row Show all	>Potri.013G051500.1 pacid=42810730 polypeptide=Potri.013G051500.1.p locus=Potri.013G051500 ID=Potri.013G051500.1.v4.1 annot-version=v4.1 ATGAACGACGCAGATGTCTCCAAGCAGATCCAGCAGATGGTCAGATTCATCCGCCAAGAAGCGGAAGAAAAGGCCAACGAGATCCTAGTTTCTGCTGAAG AAGAATTCAATATAGAGAAGCTGCAACTGGTTGAGGCAGAGAAGAAGAAGATCAGGCAAGAGTATGAGCGTAAAGAGAAGCAAGTTCAAGTTCGCAAAAA GATTGAGTATTCAATGCAGCTTAATGCCTCTCGGATCAAAGTGCTTCAAGCTCAAGATGATATGGTTAATTCCATGAAAGATGGAGCAGGAAAGGAGCTT TTGAATGTCAGCCAAAATCAGCATCACTACAAGAATCTTCTCAAAGACCTTATTGTTCAGAGTTTGCTCAGATTGAAGGAGCCTGCTGTCTTGCTACGTT GCCGGAAAGATGACCATAATTTGGTGGAGTCTGTCCTGCATTCAGCAAAGGATGAATATGCTGAGAAAGCAAATGTTTTCCCCCCAGAAATCATTGTGGA CCATAATATCTATCTCCCACCTGCTCCTAGCCATCATAATGCTCATGGTCTTTCCTGCTCTGGAGGTGTGGTGTTGGCGTCTCGAGATGGGAAGATTGTG TTTGAAAATTCCCTTGATGCGCGTTTGGATGTTGCATTCCGTAAAAAACTTCCCGAGATCCGCAAGTTGCTAGTTGGCCAGGCTGTATAA
AA sequence Show only first row Show all	>Potri.013G051500.1 pacid=42810730 polypeptide=Potri.013G051500.1.p locus=Potri.013G051500 ID=Potri.013G051500.1.v4.1 annot-version=v4.1 MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKEL LNVSQNQHHYKNLLKDLIVQSLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHNAHGLSCSGGVVLASRDGKIV FENSLDARLDVAFRKKLPEIRKLLVGQAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	0	1
AT4G37830			cytochrome c oxidase-related (...		Potri.007G008800 [exp]	1.41	0.9616
AT2G27020		PAG1	20S proteasome alpha subunit G...		Potri.009G020800 [exp]	1.41	0.9582	PAG1.2
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Potri.005G229200 [exp]	3.74	0.9250
AT1G09150			pseudouridine synthase and arc...		Potri.005G023600 [exp]	4.00	0.9426
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.007G005100 [exp]	4.24	0.9196
AT4G16450			unknown protein		Potri.006G016300 [exp]	4.58	0.9450
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Potri.012G100400 [exp]	5.00	0.9408
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.008G155500 [exp]	6.16	0.9179	Pt-PBD2.3
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	6.32	0.9362	Pt-PAE1.1
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Potri.006G059300 [exp]	6.48	0.9394

Compare expression of checked genes

Potri.013G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.