Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 408 / 1e-138 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 280 / 2e-88 ARM repeat superfamily protein (.1) AT1G23030 243 / 5e-73 PUB11 ARM repeat superfamily protein (.1) AT5G18330 226 / 3e-68 ARM repeat superfamily protein (.1) AT1G71020 225 / 2e-67 ARM repeat superfamily protein (.1.2) AT3G54850 228 / 4e-67 ATPUB14 plant U-box 14 (.1) AT5G18340 221 / 6e-66 ARM repeat superfamily protein (.1) AT2G28830 223 / 3e-63 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 217 / 1e-62 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G42340 189 / 9e-53 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052500 [exp] 765 / 0 AT3G07360 415 / 3e-142 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 642 / 0 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G248600 [exp] 499 / 3e-174 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.010G113900 [exp] 239 / 4e-71 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 238 / 7e-71 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 235 / 1e-69 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 229 / 2e-67 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.001G238500 [exp] 223 / 5e-65 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 223 / 9e-65 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038218 [exp] 408 / 2e-138 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10025885 [exp] 407 / 5e-138 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10009594 [exp] 388 / 2e-130 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10020413 [exp] 380 / 2e-127 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10037970 [exp] 238 / 1e-70 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 233 / 1e-68 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 231 / 1e-65 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10016565 [exp] 218 / 5e-63 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 213 / 3e-61 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 183 / 3e-50 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G052200.2 pacid=42810723 polypeptide=Potri.013G052200.2.p locus=Potri.013G052200 ID=Potri.013G052200.2.v4.1 annot-version=v4.1 ATGGCTGAAGCTGGAGTTCTTGAAAAGGTTACTAATGAGGCCATGAGGATTTTGAGTGTCTTGAAAGAATTGAAATTCAAGAAATCTTCGAAGGTGCTGG AGGTTACAATGACAAAGGAAACAGAGTTAAAGAAAGAATTGGAGAAACTAGTAAAGACAATTCTTGTCGAGGAGGATTATAGAGTGGAGGTTACTGACGA GGCCATGAGGATTTTAAGTGTCTTGAAAGAATTGAAATTCAAGAAATCTTCGAAGGTGGTGGAGGTTACAATGACAAAGGAAACAGAGTTAAAGAAAGAA TTGGAGAAACTAGTAAAGACAATTCTTGTCGAGGAGGATTATAGAGTGGAGGTTACTGATGAGGCCATGAGGATTTTGAGTGTCTTGAAAGAATTGAAAT TCAAGAAATCTTCGAAGGTGGTGGATAATACAGTTATCCCTGAAGAATTTATATGTCCCATTTCGAAGAAGATAATGAATGACCCTGTTGTCCTGGCTAC TGGACAGACCTACGATCGACCATTCATCCAAAGATTGCTAAATGAAGGGCACAGAACATGTCCCCAGACCCAGCAAGTCATTTCTCATACTTTCCTGACC CCTAATCATTTGGTGCAAGAAATGATTTCAAAGTGGTGTATGGAGCGTGGAATTGAGCTACCAAAACCCCTAGTTGATGATGATGTGCATACTGATGCTG ACAGAGTCTATTTGAAGTCACTGCTTGAAAAGACGTCCTCTTCCCTTTCTGATCAAAAAGAAGCTGCAAAAGAGCTTCGGCGTCTAACTAAAAGCATGCC ATCATTTCGGGCCCTTTTCAGTGACTCAACCGATGCCATTCCTCAATTGCTCAATCCACTATCACCAGGCAGAGCTAACACTCACCCTGATCTGCAAGAA GATTTGATTACAACAATTTTCAACCTCTCCATTCATGAAAATAATAAGCAGCTATTTGCAGAAAATCCACATGTCATCCCTCTGCTTGTTGAATCTGTAA GATCTGGAACCATTGAAACAAGAAGAAATGCTGCTGCCGCTCTCTTCTCCTTATCAGCCCTAGATTCAAACAAGCTCATTATTGGAAAATCTGGTGCTCT CAAACCTCTAATTGGCCTTTTAGAAGAAGGGCATCCACCGGCAATGAAGGATGCTGCATTGGCAATATTCAAGCTTTGTCTTGTCCTTGAGAATAGAGTC AGGGCTGTCCAAGAAGGGGCAGTCAGGGTAATCCTAAAAAAGATAATGGATTGCATCCTTGTTGATGAGTTGTTGGCTACTCTTGCAATACTTACTAGCC AACAGGAGGCTGTTCAGGAAATGGGGCTACTTGGTGCGGTGCCTTGCTTAATTGACATTATAAGGGACAGTAGTTCTGAGCGCAACAAGGAGAATTGTGC TGCGATTTTACATACAATCTGTCTAAATGACCGCACTAAATGGCGGGCCGTCATGGAAGAGGAAAAGGCCAATGCTACACTTTCGATACTTGCTGAGCAT GGGACTTCAAGAGCCAAGAGGAAAGCTAATGGCATCCTCAAGATACTGAATGGAGCTGCTTCAATCATACATACTCTATGA
AA sequence Show only first row Show all	>Potri.013G052200.2 pacid=42810723 polypeptide=Potri.013G052200.2.p locus=Potri.013G052200 ID=Potri.013G052200.2.v4.1 annot-version=v4.1 MAEAGVLEKVTNEAMRILSVLKELKFKKSSKVLEVTMTKETELKKELEKLVKTILVEEDYRVEVTDEAMRILSVLKELKFKKSSKVVEVTMTKETELKKE LEKLVKTILVEEDYRVEVTDEAMRILSVLKELKFKKSSKVVDNTVIPEEFICPISKKIMNDPVVLATGQTYDRPFIQRLLNEGHRTCPQTQQVISHTFLT PNHLVQEMISKWCMERGIELPKPLVDDDVHTDADRVYLKSLLEKTSSSLSDQKEAAKELRRLTKSMPSFRALFSDSTDAIPQLLNPLSPGRANTHPDLQE DLITTIFNLSIHENNKQLFAENPHVIPLLVESVRSGTIETRRNAAAALFSLSALDSNKLIIGKSGALKPLIGLLEEGHPPAMKDAALAIFKLCLVLENRV RAVQEGAVRVILKKIMDCILVDELLATLAILTSQQEAVQEMGLLGAVPCLIDIIRDSSSERNKENCAAILHTICLNDRTKWRAVMEEEKANATLSILAEH GTSRAKRKANGILKILNGAASIIHTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	0	1
					Potri.015G010500 [exp]	3.74	0.6425
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052500 [exp]	4.58	0.6080
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.001G113800 [exp]	14.38	0.6678
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.008G125800 [exp]	14.49	0.5791
AT1G01500			Erythronate-4-phosphate dehydr...		Potri.002G163300 [exp]	23.68	0.5982
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.008G161500 [exp]	26.11	0.5277
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.005G003000 [exp]	37.69	0.5656
AT2G16030			S-adenosyl-L-methionine-depend...		Potri.019G125300 [exp]	118.21	0.4959
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.015G144100 [exp]	122.39	0.4744
AT3G52060			Core-2/I-branching beta-1,6-N-...		Potri.008G018600 [exp]	134.81	0.5257

Compare expression of checked genes

Potri.013G052200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.