Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07360 414 / 3e-142 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT5G18320 274 / 2e-87 ARM repeat superfamily protein (.1) AT1G23030 242 / 2e-73 PUB11 ARM repeat superfamily protein (.1) AT3G54850 232 / 2e-69 ATPUB14 plant U-box 14 (.1) AT5G18330 225 / 1e-68 ARM repeat superfamily protein (.1) AT1G71020 223 / 2e-67 ARM repeat superfamily protein (.1.2) AT2G28830 227 / 1e-65 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 222 / 2e-65 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G18340 213 / 4e-64 ARM repeat superfamily protein (.1) AT5G42340 192 / 3e-54 PUB15 Plant U-Box 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052200 [exp] 781 / 0 AT3G07360 408 / 1e-138 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.019G029500 [exp] 665 / 0 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.002G248600 [exp] 514 / 0 AT3G07360 573 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Potri.008G035700 [exp] 239 / 3e-72 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 237 / 3e-71 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.008G128600 [exp] 236 / 6e-71 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.010G226500 [exp] 227 / 1e-67 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 226 / 5e-67 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 226 / 5e-67 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038218 [exp] 423 / 2e-145 AT3G07360 489 / 2e-171 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10025885 [exp] 421 / 2e-144 AT3G07360 499 / 2e-175 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10009594 [exp] 387 / 2e-131 AT3G07360 482 / 2e-168 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10020413 [exp] 380 / 2e-128 AT3G07360 478 / 8e-167 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) Lus10037970 [exp] 242 / 4e-73 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10043471 [exp] 229 / 2e-68 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 229 / 1e-65 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10016565 [exp] 220 / 1e-64 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 215 / 7e-63 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 186 / 7e-52 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.013G052500.1 pacid=42812684 polypeptide=Potri.013G052500.1.p locus=Potri.013G052500 ID=Potri.013G052500.1.v4.1 annot-version=v4.1 ATGGCTGAAGCTGGAGTTCTTGAAACTATGCAACGTACAATGACAAAGGAAACAGAGTTAAAGAAAGAATTGGAGAAACTAGTACAGACAATTCTTGTCG AGGAGGATTATAGAGTGGAGGTTACTGATGAGGCCATGAGGATTTTGAGTGTCTTGAAAGAATTGAAATTCAAGAAATCTTCGAAGGTGGTGGATAATAC AGTTATCCCTGAAGAATTTATATGTCCCATTTCGAAGAAGATAATGAATGACCCTGTTGTCCTGGCTACTGGACAGACTTACGATCGCCCATTCATCCAA AGATTGCTAAATGAAGGGCACAGAACATGTCCCCAGACCCAGCAAGTCATTTCTCATACTTTCCTGACTCCTAATCATTTGGTGCAAGAAATGATTTCAA AGTGGCGCAAGGAGCGTGGAATTGAGCTACCAAAGCCCCTAGTTGATGATGATGTGCATACTGATGCTGACAGAGTCTATTTGAAGTCACTGCTTGAAAA GATGTCCTCTTCCCTTTCTGATCAAAAAGAAGCTGCAAAAGAGCTTCGGCTTATAACTAAAAAGAAGCCATCATTTCGGGCCCTTTTCAGTGACTCAACG GATGCCATTCCTCAATTGCTCAATCCACTATCACCAGGCAGAGCTAACACTCACCCTGATCTGCAAGAAGATTTGATTACAACAATTTTCAACCTCTCCA TTCATGAAAATAATAAGCAGCTATTTGCAGAAAATCCACATGTCATCCCTCTGCTTGTTGAATCTGTAAGATCTGGAACCATTGAAACAAGAAGCAATGC TGCTGCCGCTCTCTTCTCCTTATCATCCCTAGATTCAAACAAGCTCATTATTGGAAAAGCTGGTGCTCTCAATCCTCTAATTGGCCTTTTAGAAGAAGGG CATCCACCGGCAATGAAGGATGCTGCATTGGCAATATTCAACCTTTGTCTTGTCCTTGAGAATAAAGTCAGGGCTGTCCAAGAAGGGGCAGTCAGGGTAA TCCTAAAAAAGATAATGGATTGCATCCTTGTTGATGAGTTGTTGGCTACTCTTGCAATACTTACTAGCCAACAGGAGGCTGTTCAGGAAATGGGGCTGCT TGGTGCGGTGCCTTGCTTAATTGACATTATAAGGGAGAGTAGTTCTGAGCGCAACAAGGAGAATTGTGCTGCGATTTTACATACAATCTGTCTAAATGAC CGCACTAAATGGCGGGCCGTCATGGAAGAGGAAAAGGCCAATGCTACACTTTCGATACTTGCTGAGCATGGGACTTCAAGAGCCAAGAGGAAAGCTAATG GCATCCTCAAGATACTGAATAGAGCTGCTTCAATCACACATACTCTATGA
AA sequence Show only first row Show all	>Potri.013G052500.1 pacid=42812684 polypeptide=Potri.013G052500.1.p locus=Potri.013G052500 ID=Potri.013G052500.1.v4.1 annot-version=v4.1 MAEAGVLETMQRTMTKETELKKELEKLVQTILVEEDYRVEVTDEAMRILSVLKELKFKKSSKVVDNTVIPEEFICPISKKIMNDPVVLATGQTYDRPFIQ RLLNEGHRTCPQTQQVISHTFLTPNHLVQEMISKWRKERGIELPKPLVDDDVHTDADRVYLKSLLEKMSSSLSDQKEAAKELRLITKKKPSFRALFSDST DAIPQLLNPLSPGRANTHPDLQEDLITTIFNLSIHENNKQLFAENPHVIPLLVESVRSGTIETRSNAAAALFSLSSLDSNKLIIGKAGALNPLIGLLEEG HPPAMKDAALAIFNLCLVLENKVRAVQEGAVRVILKKIMDCILVDELLATLAILTSQQEAVQEMGLLGAVPCLIDIIRESSSERNKENCAAILHTICLND RTKWRAVMEEEKANATLSILAEHGTSRAKRKANGILKILNRAASITHTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052500 [exp]	0	1
AT5G15710			Galactose oxidase/kelch repeat...		Potri.004G112400 [exp]	2.44	0.6654
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052200 [exp]	4.58	0.6080
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.011G148600 [exp]	11.83	0.6138
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	14.42	0.6028
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Potri.010G123801 [exp]	21.81	0.5527
AT5G27380		GSHB, GSH2	glutathione synthetase 2 (.1)		Potri.005G038100 [exp]	29.25	0.5876
AT3G07570			Cytochrome b561/ferric reducta...		Potri.014G197500 [exp]	30.49	0.5951
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.008G027000 [exp]	36.08	0.5940
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Potri.011G166601 [exp]	48.85	0.5731
AT4G12850	FAR1_related		Far-red impaired responsive (F...		Potri.014G176600 [exp]	55.96	0.5352

Compare expression of checked genes

Potri.013G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.