Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 553 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 535 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052900 [exp] 956 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 953 / 0 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G255600 [exp] 573 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 563 / 0 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018522 [exp] 578 / 0 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022856 [exp] 563 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039740 [exp] 559 / 0 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10024966 [exp] 499 / 2e-174 AT2G20340 706 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10012601 [exp] 89 / 5e-21 AT2G20340 100 / 1e-25 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00282 [poplar] [flax] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Potri.013G052800.1 pacid=42810813 polypeptide=Potri.013G052800.1.p locus=Potri.013G052800 ID=Potri.013G052800.1.v4.1 annot-version=v4.1 ATGGGTTCTCTATCCACAAACACTTTCTCCCCTTTAGACCCAAATGGTTTCACCAATGATTCCAAAATGGTGATCGATTTCATTGCTGATTATTACAAGA ATATTGAAAACAACCCGGTTCAAAGCCAAGTGAAACCAGGGTACTTATTGACCCAATTGCCAGACACTGCCCCATATTGCGAGGAATCCTTAGAAGATGT TCTCAAAGATGTAACTGATAGCATTATCCCAGGCCTCACTCATTGGCAAAGCCCTAACTTCTTTGCTTACTTCCAAGCAAATGCAAGCACTGCAGGGTTT GTTGGTGAGATGCTCTGCACAGGCCTTAATGTTGTTGGCTTCAACTGGATTGCATCTCCTGCTGCAACCGAACTGGAATCCATTGTAATGGACTGGACGG GAAAGATGCTCAAGCTCCCATCTACTTTTTTGTTCTCAGGAAACGGAGGTGGTGTCTTGCACGGTAGCACTTGTGAGGCTATAGTTTGCACCCTAGTTGC AGCAAGAGACGCGACCTTGAGAATGATTGGAGCTGAAAACATTACGAAGCTGGTAGTTTATGCCTCTGATCAAACTCATTCAACTCTACTTAAGGGCGTC AAATTAGTTGGAATTCCATCCTCTAATTTTCGATGCCTCTCTACCTCATTTTCATCGGAATTTTCGTTATCACCTCAAGCATTGGAAGATGCAATTGAAA ATGATATCAAAGCTGGATTTGTGCCCTTATTTTTATGCGCTACTATAGGCACTACAGCATGTGGAGCTGTTGATCCTGTTATGGATCTGGGGAAAATTGC CAGGAAATATAATCTATGGTTCCACGTTGATGCAGCTTACGCAGGTAGTGCATGCATATGCCCTGAATTCAGGCATTACCTGGATGGAGTAGAACTTGCA GACTCGTTGAGCATGAATCCACATAAATGGTTACTCACTAACATGGATTGTTGCTGCTTGTGGGTTAAGCAGCCTCGTTTATTAATCGAGTCACTGTCCA GTGATCCAGAATACTTGAGGAACAATGCCAGTGAATCAAGTGACGTCGTGGACTACAAAGATTGGCAAATTGCATTGAGTAGGCGATTCAGAGCTCTGAA GCTTTGGATTGTGATTCGCAGGCATGGATTAGCAAACCTTATGTGCCATATTCGTAGCGATGTGAACTTGGCTAAGCGGTTTGAGTCACTGGTGGCTAAA GACAGTAGGTTTGAGGTGGTGGTGCGAAGGAGGTTTTCTCTGGTATGTTTTAGGCTCAAGCACAACGATGAATGCCAAGGCTTGGAATTGAACCGTAAGC TTCTAGCTGCAGTGAATGAAAGTGGTCGTGCATTCATGACTCACGCGGTGGTTGGTGGCTTGTTTATCATACGCTGTGCAATTGGGTCAACCTTGACTGA AGAACGACATGTAGATGATTTGTGGAAGTTGATTCAAGAAAAGGCAGCAGATCTTGTCAAAGAAACAGGTGATATTGGATAA
AA sequence Show only first row Show all	>Potri.013G052800.1 pacid=42810813 polypeptide=Potri.013G052800.1.p locus=Potri.013G052800 ID=Potri.013G052800.1.v4.1 annot-version=v4.1 MGSLSTNTFSPLDPNGFTNDSKMVIDFIADYYKNIENNPVQSQVKPGYLLTQLPDTAPYCEESLEDVLKDVTDSIIPGLTHWQSPNFFAYFQANASTAGF VGEMLCTGLNVVGFNWIASPAATELESIVMDWTGKMLKLPSTFLFSGNGGGVLHGSTCEAIVCTLVAARDATLRMIGAENITKLVVYASDQTHSTLLKGV KLVGIPSSNFRCLSTSFSSEFSLSPQALEDAIENDIKAGFVPLFLCATIGTTACGAVDPVMDLGKIARKYNLWFHVDAAYAGSACICPEFRHYLDGVELA DSLSMNPHKWLLTNMDCCCLWVKQPRLLIESLSSDPEYLRNNASESSDVVDYKDWQIALSRRFRALKLWIVIRRHGLANLMCHIRSDVNLAKRFESLVAK DSRFEVVVRRRFSLVCFRLKHNDECQGLELNRKLLAAVNESGRAFMTHAVVGGLFIIRCAIGSTLTEERHVDDLWKLIQEKAADLVKETGDIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	0	1
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	1.00	0.9983
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	3.16	0.9915
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.004G155866 [exp]	5.38	0.9847
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.011G067500 [exp]	6.00	0.9908	Pt-CIPK20.1
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Potri.018G088800 [exp]	7.21	0.9897
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232400 [exp]	7.48	0.9919
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	8.36	0.9929
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	8.94	0.9924
AT3G02645			Plant protein of unknown funct...		Potri.003G205900 [exp]	9.94	0.9915
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G165200 [exp]	10.09	0.9925

Compare expression of checked genes

Potri.013G052800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.