Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79620 201 / 5e-55 Leucine-rich repeat protein kinase family protein (.1) AT1G24030 189 / 2e-54 Protein kinase superfamily protein (.1.2) AT1G60800 193 / 1e-53 NIK3 NSP-interacting kinase 3 (.1) AT1G09440 189 / 2e-53 Protein kinase superfamily protein (.1) AT5G18500 189 / 2e-53 Protein kinase superfamily protein (.1.2) AT1G56720 189 / 3e-53 Protein kinase superfamily protein (.1.2.3) AT2G42960 189 / 3e-53 Protein kinase superfamily protein (.1) AT3G59110 188 / 8e-53 Protein kinase superfamily protein (.1) AT2G19230 193 / 4e-52 Leucine-rich repeat transmembrane protein kinase protein (.1) AT2G29000 190 / 2e-51 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G030600 [exp] 931 / 0 AT1G24030 191 / 2e-55 Protein kinase superfamily protein (.1.2) Potri.006G114400 [exp] 213 / 4e-59 AT1G79620 1295 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 208 / 2e-57 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.016G144100 [exp] 207 / 6e-57 AT1G79620 1380 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 206 / 8e-57 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G145900 [exp] 195 / 9e-57 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G095900 [exp] 194 / 2e-56 AT1G24030 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G231700 [exp] 202 / 1e-55 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G059000 [exp] 196 / 1e-55 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006544 [exp] 706 / 0 AT3G59110 205 / 1e-57 Protein kinase superfamily protein (.1) Lus10003274 [exp] 697 / 0 AT1G70530 205 / 4e-59 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10030863 [exp] 208 / 2e-59 AT1G09440 163 / 2e-42 Protein kinase superfamily protein (.1) Lus10012159 [exp] 208 / 2e-57 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10028549 [exp] 194 / 1e-56 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10038174 [exp] 200 / 3e-56 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010703 [exp] 194 / 3e-56 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029187 [exp] 194 / 4e-56 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10006215 [exp] 194 / 2e-55 AT1G56720 599 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10023146 [exp] 192 / 5e-55 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.013G053001.2 pacid=42811352 polypeptide=Potri.013G053001.2.p locus=Potri.013G053001 ID=Potri.013G053001.2.v4.1 annot-version=v4.1 ATGATCAGGAGAGGATATCTCTCTTCACCAATTCTTGCCTCCTTGTGCGTAGCAGTCTTCTTCATTCATGCCTTGGCAGACGATATTCCTTCACCGGATG GCACATCAGCTACCTGTGTCTTAGACTTCAAGGAATTCCCTTACCAGCCAACCGGTGAGTGCATAGGCCAACAAGAGAGAATCAAAGACTGGAACAGCTT TGGCACAACACTTTGCTGCCGTGATGTCCTCAACGTCCTAACAAAACTCTTAGCCTGGCGTGCATCAAACACAAGTGGCTATATTTTCCTCCCAGAAGAT CAATGGGCGAACTGTAGCGGTGGCTTTACCAGACAAAACCTTGTATCACCATATTCATGTGGCTTTGATAAGCTCTATAATGGGAGAAGTGCTTGCTCAA GTTTTTCTTTGTCATCAATAAAGGAACAGACGTATTACAAAAATGCAGTAGCCTCGTGTTCGGATTTTAGCTCTTCGTACGATGATGGCTGCGGCAACTG CATCGAGGCAATATTGGAAGCGAGGGATTTTCAGCTGCGACAATTAGATGTCAAAGATGATGACAAGGAGGAAAAAATAGTTTGTGGGGTGGCAGTTCTT ATATCTGTTGTGGCTGCAAATTTGAATAATCAATCTCTGATCGATGATTTCTATAGTTGTTTGCCTGCTTTAGATGAATTCAATGAAGGGTACATGAAAA TCAAATATTCTGTGGTGAAAGTGGTATTTGCGGTCTTTATAGCAATCATCGTATTGTTGCTGGTCATTCTTTTGATAAAATATGTGAGCAAGGGCAAGAA GAAGCGTCCTAAACCTGTTCCTCAATCTGAAGAGATCACCGCCTGGTCTGGCCTCTATAGATTCTCCAAGGCTGAGATTGAGAATGCCATTAACCACAGC AAGGTGAGGAAGAGCCTAGGGAGAGGAAGTGCTGGGCAAGTTTATAAAGGTGTTTTACCTAGTGGACAAGTAGTAGCCATCAAGCACATACATAATAGCA GCTCATGCGATTCTTTCCAGCGCGAAGTTGAAGGCCTTTCTAGGGTTAGGCATCCAAATCTTGTTTGTCTCTTCGGTTGCTGCATTGAGGGAGGCGAACG GTATCTTGTCTATGAATATTGTGCAGCTGGGAACTTGTCTCAAAATCTCCGAAGGAAAGATACTGTATTGACATGGGAAAGAAGAGTTAAGATCCTAAGA GACTGTGCTCTTGGACTGAGATACCTTCACCATTTTATAGATGGTTGCATCGTCCACAGGGACATTAAGCTTACGAACATCCTTCTGACAGAGAATTTGG AACCAAAACTCTCAGATTTTGGGTTGGCAAAGATGCTTGGCATGGAAGAGAGCAAAGTTTTCACAGATGTTAGAGGAACTATGGGCTATATGGATCCAGA ATATATGAGCAATGCCAAACTAACATGTGCCAGTGACATCTATAGCTTTGGTATTGTTGCTCTTCAACTTTTATCGGGGCAAAAAGTCATTGAGTTGGAT CTTGATGCTAGAGACCAGCTCATCCGAAAGGCAAAGGATGTAAATGCAGGAAAACGTCCGTTAACAGATTTTGAAGATCCTGGCCTCAACAAAAAGGTCA ACAGCGTTGATTTTGAAGCCATTTTGCAAATTGCTGTACTATGTGTGGCAAAATCAAGCAAAGGTCGCCCAACGATTGATGATGTCTTCGAAGAGATAGA GAAGGCTTGGAAAAACACACAAGCTGAAATGAAAGCAAACAGCGCAATCGGCTCATCAATGTCCAAATCCATGGAAGTGATACCTGTATAA
AA sequence Show only first row Show all	>Potri.013G053001.2 pacid=42811352 polypeptide=Potri.013G053001.2.p locus=Potri.013G053001 ID=Potri.013G053001.2.v4.1 annot-version=v4.1 MIRRGYLSSPILASLCVAVFFIHALADDIPSPDGTSATCVLDFKEFPYQPTGECIGQQERIKDWNSFGTTLCCRDVLNVLTKLLAWRASNTSGYIFLPED QWANCSGGFTRQNLVSPYSCGFDKLYNGRSACSSFSLSSIKEQTYYKNAVASCSDFSSSYDDGCGNCIEAILEARDFQLRQLDVKDDDKEEKIVCGVAVL ISVVAANLNNQSLIDDFYSCLPALDEFNEGYMKIKYSVVKVVFAVFIAIIVLLLVILLIKYVSKGKKKRPKPVPQSEEITAWSGLYRFSKAEIENAINHS KVRKSLGRGSAGQVYKGVLPSGQVVAIKHIHNSSSCDSFQREVEGLSRVRHPNLVCLFGCCIEGGERYLVYEYCAAGNLSQNLRRKDTVLTWERRVKILR DCALGLRYLHHFIDGCIVHRDIKLTNILLTENLEPKLSDFGLAKMLGMEESKVFTDVRGTMGYMDPEYMSNAKLTCASDIYSFGIVALQLLSGQKVIELD LDARDQLIRKAKDVNAGKRPLTDFEDPGLNKKVNSVDFEAILQIAVLCVAKSSKGRPTIDDVFEEIEKAWKNTQAEMKANSAIGSSMSKSMEVIPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79620			Leucine-rich repeat protein ki...		Potri.013G053001 [exp]	0	1
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.013G157100 [exp]	1.00	0.9954
AT1G56140			Leucine-rich repeat transmembr...		Potri.018G132900 [exp]	2.44	0.9919
					Potri.001G151150 [exp]	4.58	0.9828
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G143600 [exp]	6.16	0.9923
AT3G08680			Leucine-rich repeat protein ki...		Potri.003G138900 [exp]	7.48	0.9917
AT1G16250			Galactose oxidase/kelch repeat...		Potri.011G046100 [exp]	8.66	0.9867
AT1G16250			Galactose oxidase/kelch repeat...		Potri.004G037400 [exp]	9.48	0.9908
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.009G157100 [exp]	9.53	0.9873	Pt-GER2.21
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	11.18	0.9911
					Potri.012G066250 [exp]	12.52	0.9051

Compare expression of checked genes

Potri.013G053001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.