Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08550 585 / 0 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) AT2G21860 62 / 6e-10 violaxanthin de-epoxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085800 [exp] 64 / 1e-10 AT2G21860 700 / 0.0 violaxanthin de-epoxidase-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021986 [exp] 589 / 0 AT1G08550 595 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10042524 [exp] 589 / 0 AT1G08550 592 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10032756 [exp] 67 / 1e-11 AT2G21860 699 / 0.0 violaxanthin de-epoxidase-related (.1) Lus10002789 [exp] 43 / 0.0005 AT2G21860 393 / 2e-134 violaxanthin de-epoxidase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [poplar] [flax] Calycin PF07137 [poplar] [flax] VDE VDE lipocalin domain
Representative CDS sequence Show only first row Show all	>Potri.013G053100.2 pacid=42810726 polypeptide=Potri.013G053100.2.p locus=Potri.013G053100 ID=Potri.013G053100.2.v4.1 annot-version=v4.1 ATGGCATTGGCGGCAAACCCATTTTGTTTGTCCCAAGAACAATATATTATCAGCAGTTCTTCCGTTGCCAAGTCAGGACTTGCAAGTGATGGCAGGTTTC ATAGGCGACAGAGGCTTCATTTCCATGGGGCAGTTTTGTCTCAATTTTGGCCAAATAGCAGAAAGTTGAGATACATTCAGTCGATAAGGTCTCATAGACA TCACTATGGGGGGGTGATAAGATGTTCAAATCAGCTCTCGGACTGGACAAAGAAGTTTTCTTCTTTGTGTAGCTCTAGTAGTAGAAGTATGCCCAAGGCA ATAGAAAGACTTAATTTTGTGGTATTGAGTGTGACAAATGCCCTGAAAGAAAGAAACAACTTGGAGTGCTTGAAACTGGCTGGCATACTACTATGTGCAT TACTGGTCATTCCATCAGCTGATGCCGTTGATGCTCTCAAAACTTGTACCTGCTTATTGAAGGAGTGCAGGCTAGAATTGGCAAAGTGTATTGCAAACCC ATCTTGTGCAGCTAATGTTGCTTGCCTCCAGACATGCAATAACCGGCCTGATGAGACTGAATGCCAGATCAAATGTGGTGACCTATTTGAAAACAGTGTT GTCGATGAATTCAATGAGTGTGCAGTTTCACGAAAGAAGTGTGTACCTCGGAAGTCTGATGTTGGGGAATTCCCTGTCCCTGATCCTGCTGTTCTTGTCG AGAACTTTAACATGGCAGATTTCAGTGGGAAGTGGTTCATCACTAGTGGCCTAAATCCTACTTTTGATACTTTTGACTGCCAATTGCATGAATTCCATAC AGAATCCAACAAGCTTGTTGGAAACTTGTCATGGAGGATAAAAACTCCAGATACTGGCTTTTTCACTCGATCAGCTGTGCAGAGGTTTGTGCAAGATCCA GAGCATCCTGGAATACTCTACAATCACGACAATGAGTATCTTCACTATCAAGATGACTGGTATATTTTATCATCGAAGATAGAAAATAAACAAGATGATT ATGTATTTGTGTACTACCAAGGCAGAAATGATGCATGGGATGGATATGGCGGTGCAGTTGTGTACACAAGAAGTGCAGTTCTACCAGAAAGCATTGTTCC TGAACTTGAGAAGGCAGCAAAAAGCGTAGGAAGAGACTTTAGCAAATTCATCAGAACAGATAATACTTGTGGGCCTGAGCCTCCCCTTGTAGAGAGACTG GAGAAGACTGTAGAGGAAGGGGAGAAGACTATTATAAAGGAGGTTGAAGAAATAGAAGAGAAGGTAGAGAAGGCAGGGAAGACTGAGTTGAGCTTGTTCC AGAGATTGACAGAAGGATTTAAAGAAATACAAAAAGACGAGGAAAATTTCTTAAGAGAATTAAGTAAAGAAGAGACGGATCTATTAAATGATCTGAGAAT GGAAGCAGGTGAGGTGGAGAAACTCTTTGGACGAGCACTGCCTATAAGGAAATTAAGATAG
AA sequence Show only first row Show all	>Potri.013G053100.2 pacid=42810726 polypeptide=Potri.013G053100.2.p locus=Potri.013G053100 ID=Potri.013G053100.2.v4.1 annot-version=v4.1 MALAANPFCLSQEQYIISSSSVAKSGLASDGRFHRRQRLHFHGAVLSQFWPNSRKLRYIQSIRSHRHHYGGVIRCSNQLSDWTKKFSSLCSSSSRSMPKA IERLNFVVLSVTNALKERNNLECLKLAGILLCALLVIPSADAVDALKTCTCLLKECRLELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSV VDEFNECAVSRKKCVPRKSDVGEFPVPDPAVLVENFNMADFSGKWFITSGLNPTFDTFDCQLHEFHTESNKLVGNLSWRIKTPDTGFFTRSAVQRFVQDP EHPGILYNHDNEYLHYQDDWYILSSKIENKQDDYVFVYYQGRNDAWDGYGGAVVYTRSAVLPESIVPELEKAAKSVGRDFSKFIRTDNTCGPEPPLVERL EKTVEEGEKTIIKEVEEIEEKVEKAGKTELSLFQRLTEGFKEIQKDEENFLRELSKEETDLLNDLRMEAGEVEKLFGRALPIRKLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	0	1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	1.73	0.9856
AT1G56500			haloacid dehalogenase-like hyd...		Potri.013G007800 [exp]	2.23	0.9807
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Potri.015G010600 [exp]	2.44	0.9818	Pt-PPH1.1
AT4G29590			S-adenosyl-L-methionine-depend...		Potri.006G150500 [exp]	2.82	0.9809
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	3.00	0.9773
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	4.00	0.9821
AT2G27680			NAD(P)-linked oxidoreductase s...		Potri.009G146000 [exp]	5.47	0.9734
AT5G27560			Domain of unknown function (DU...		Potri.013G020800 [exp]	5.83	0.9631
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Potri.001G412900 [exp]	6.32	0.9608
AT3G46100		ATHRS1	Histidyl-tRNA synthetase 1 (.1...		Potri.006G124400 [exp]	6.85	0.9595

Compare expression of checked genes

Potri.013G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.