Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 259 / 3e-83 F-box and associated interaction domains-containing protein (.1) AT3G23880 88 / 2e-19 F-box and associated interaction domains-containing protein (.1) AT4G12560 87 / 8e-19 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 72 / 8e-14 F-box associated ubiquitination effector family protein (.1) AT3G06240 64 / 3e-11 F-box family protein (.1) AT3G16210 60 / 9e-10 F-box family protein (.1) AT3G49980 58 / 3e-09 F-box and associated interaction domains-containing protein (.1) AT2G27520 57 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT5G49610 57 / 7e-09 F-box family protein (.1) AT1G12855 57 / 8e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G223000 [exp] 296 / 6e-98 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 296 / 1e-97 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 107 / 5e-26 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 106 / 1e-25 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 103 / 1e-24 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G011400 [exp] 102 / 4e-24 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 97 / 4e-22 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G199800 [exp] 96 / 8e-22 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 89 / 1e-19 AT3G06240 140 / 7e-38 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012355 [exp] 225 / 2e-70 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 199 / 1e-61 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 150 / 1e-41 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 114 / 4e-28 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012356 [exp] 97 / 4e-23 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10026789 [exp] 84 / 5e-19 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 87 / 9e-19 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10039024 [exp] 82 / 7e-17 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10023239 [exp] 78 / 1e-15 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10017605 [exp] 77 / 1e-15 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.013G053301.2 pacid=42812480 polypeptide=Potri.013G053301.2.p locus=Potri.013G053301 ID=Potri.013G053301.2.v4.1 annot-version=v4.1 ATGGAGAGTCTCCCACGAGAAATTGCCGGCGATATACTGTCAAGACTGCCTGTGACATCTTTAGTTAACGTAAAGTTTGTTTGCCGATCATGGCGCAAAT TATTACAAGACAGTAGTCTTCTTGTCTTTATGCTTTTTCTTCGCACCACAAAAAAGGATCCATGTCTAATCTTACACAGCGTCCATCCTATCAAACACTA TGTTGCAGATTTTCCCTCGGATGATTCTACTCCTAACCAACTCTATGTTGCAGATTTCTCATCTGATGGAGACAGAATTGAGGTTGTCAAGAAAATCCGC GTACCGACCTTGTCTGACAGCAAACTCTTTATATACAATCCTTTCACAATGGATGTTTTGGCGCTCCCAGATTCTGCACAGTATCCGAATCAGCAGGTTG TGGTTGGATTTGGTTTTTCCTCCATGGAGAATGATTACAAAGTTGTTAAGATTGTATATTATAGCCATAGAGGAAGTATCCGTCCCTCTGGAGGTAATCT CCCACAATCAAGCGTTGAAATTTTGAGCCTTCGCAGCCTCACCTGGAGAAGTTTAGGGGAGATTCCTTACCAAATATTTGGCAAGCGGCCATCACAGGTT TTGGTCAATGGGAGACTAAATTGGGCAATTGGCCTTTATACCGGTGCAGTTCAGCTCAAGTTTTACGAAGTTCCAAGGCCTGACTGTGGCAGTTTGGACA AATTTAATCATAATCTGGTGGTTCTAGGAGGTTGTCTTTCTGCATCTGTCTATAGAAAAGACGGATATTTTGAGATCTGGGTTATGAAGGAATATAACGT GAAGGAATCTTGGATCAATCTATACAACATAGACATTATGGATCAATCCTTCGAGAACTCAGGGCTACACTTAAAACGTTCATATGCTCGAGTTATATGC CTTTTGAAGAACGGTGAGATCTTATTGGAGATGACAATCACAAGAGTGTTGCTCAGTTTTGATCCAAAATCTAAAACCTTTAAGCATCTTGCATTTCATG GATTACCAAGATGGTATGAAACCATTGTCCACGTGGGGAGTCTCCACTGGATTGACACACATGTGGTTGCTACTTGA
AA sequence Show only first row Show all	>Potri.013G053301.2 pacid=42812480 polypeptide=Potri.013G053301.2.p locus=Potri.013G053301 ID=Potri.013G053301.2.v4.1 annot-version=v4.1 MESLPREIAGDILSRLPVTSLVNVKFVCRSWRKLLQDSSLLVFMLFLRTTKKDPCLILHSVHPIKHYVADFPSDDSTPNQLYVADFSSDGDRIEVVKKIR VPTLSDSKLFIYNPFTMDVLALPDSAQYPNQQVVVGFGFSSMENDYKVVKIVYYSHRGSIRPSGGNLPQSSVEILSLRSLTWRSLGEIPYQIFGKRPSQV LVNGRLNWAIGLYTGAVQLKFYEVPRPDCGSLDKFNHNLVVLGGCLSASVYRKDGYFEIWVMKEYNVKESWINLYNIDIMDQSFENSGLHLKRSYARVIC LLKNGEILLEMTITRVLLSFDPKSKTFKHLAFHGLPRWYETIVHVGSLHWIDTHVVAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07870			F-box and associated interacti...		Potri.013G053301 [exp]	0	1
AT4G00460		ATROPGEF3, ROPG...	RHO guanyl-nucleotide exchange...		Potri.002G159700 [exp]	2.44	0.8362
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.007G052800 [exp]	2.82	0.8539
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	8.94	0.8411
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	11.83	0.8341
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	16.24	0.8432
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G137900 [exp]	19.89	0.8316
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Potri.010G067500 [exp]	22.24	0.8213
AT2G30120			unknown protein		Potri.001G281400 [exp]	24.49	0.8323
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	25.69	0.8282
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	29.66	0.8171

Compare expression of checked genes

Potri.013G053301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.