Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15010 660 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80880 277 / 9e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15200 267 / 4e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80550 233 / 6e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 236 / 4e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 228 / 2e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 218 / 9e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 217 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62540 202 / 6e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 201 / 8e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G043500 [exp] 292 / 2e-91 AT1G80880 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 270 / 4e-83 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G147200 [exp] 235 / 6e-71 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 223 / 2e-64 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 219 / 3e-64 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 213 / 1e-61 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 207 / 1e-59 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083800 [exp] 202 / 2e-57 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 199 / 2e-56 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021991 [exp] 742 / 0 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041669 [exp] 285 / 9e-89 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031837 [exp] 247 / 2e-74 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037555 [exp] 223 / 6e-66 AT1G80550 460 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011439 [exp] 220 / 3e-65 AT1G80550 460 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 219 / 6e-63 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 217 / 3e-62 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 214 / 3e-62 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 212 / 2e-60 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 206 / 3e-59 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G053600.1 pacid=42812353 polypeptide=Potri.013G053600.1.p locus=Potri.013G053600 ID=Potri.013G053600.1.v4.1 annot-version=v4.1 ATGCAAGGAATCAGAACCATAAGATGTAACCTGTCGAGATTTGTAATTCTAGCTCGAACCCATTTGATTTTTTCACATTTTGAACCAACCCACTTTGCAA ATCTAACCGTTGAGAGGCCACTGAGTTCGAAATTTTCAACTGCTTTCTCTTCTTTCTCCACTTCAAGTCTTGAAACCCCAATCACCCCAAAGCATCTCAA CGAGCCAGAAGAATGCTCTAGTGATAATGACGATAATGGCAGTGAAATGGAAAATGACGACGACGACGACGATGTTAGAGGGTTGAATTTAAGCGACGAT GGTCTTTTTCAGGATGCGAAGACCATTGTGAATATATTACAAGAATCGTGTGACAATCGTGTGGAAATGAAGAGCAAGATTGAGCAATGTGGGATTAAGG TCTCACAAGAATTGGTCTTGGAGGTGCTTTCTAGGGTACGAAATGATTGGGAGGCGGCGTTTACTTTCTTCTTGTGGGCAGCTAGGCAGCCAGGTTATGC TCATTCTGTACGTGAATATCATTCCATGATTTCTATTCTTGGTAAAATGCGAAAGTTTGATACAGCGTGGGTGTTGATTGATGAGATGAGAGGAGTTAAG ACCGGTGTATCACTGGTGACTCCACAGACTTTGTTGATCATGATTAGGAAATACTGTGCGGTGCACGATGTTGGTCGGGCTATAAACACATTTTATGCCT ACAAAAGATTTAAATTTGATATGGGGATTGAGGAGTTTCAGAGTCTTTTGTCAGCTCTTTGTCGGTATAAGAATGTGCAAGATGCTGAGCAGTTGATGTA TTGCAATAAAGCTGTATTTCCGCTTAACACGAAGAGTTTTAACATTGTGCTGAATGGTTGGTGTAATTTGATTGGTAGTCCTCGTGAATCAGAGCGAGTG TGGAGGGAGATGAGCAAGAGGGGAATTCGATTTGATGTTGTGTCGTATGCTAGTATGATGTCTTGCTATTCAAAGGCTGGTAGTCTTTATAGAGTGCTCA GGCTCTACAAACAGATGAAGAAAATTGGGATTGAACCAGATAGGAAAGTTTATAATGCGGTCATCCATGCTCTTGCGAAGGGTAGGCTTGTGAATGAAGC TTTCAACCTCATGAGAACAATGGAGGAGAAGGGTGTTGCTCCTAACATTGTCACATATAATTCACTAATTAAACCTTTATGCAGGGCAAGGAAAGTAGAA GAGGCTAAAGGGGCATTTGATGACATGTTAAAGCGCTGCATATCTCCAACCATACGCACTTACCATGCTTTCTTACGCATTTTAAGGACAGGGGAAGAAG TGTTTGCTCTCTTGGAGAAGATGAGAAAGATGGGGTGTCAACCAATTAATGATACCTACATAATGTTAATTAGGAAATTTTGCCGGTGGCGTCAGCTAGA GAATGTCTTTAAGTTGTGGGATGAAATGAGTGAGAATGGAATCAGTCCTGATCGTAGCTCATATATTGTGCTTATTCATGGTCTCTTCTTGAATGGTGAG TTGGATGCAGCCCACAAATATTACACAGAAATGAAGGAAAAGCAGTTATTACCCGAACCAAAGATAGATGAAATGCTTCAGACCTGGTTGTCTAATAAGC AAATAGCAGAGGGTCAGACCACAGAATCAAGAAGCAATCAATGTCAGACCACAGAATTAAGAAGCAATCAATTGGATTGCAGTCAGTCACGCGAGCAAAC CAGAGGCATTCCTAAGAGAAGTCATGAAAGAAATTTTATCCGACAAGCTGAAACGAGAAAAGTTGTGAGAGAGCGAGGCATTTCGTTTTGGGAGCCCTAG
AA sequence Show only first row Show all	>Potri.013G053600.1 pacid=42812353 polypeptide=Potri.013G053600.1.p locus=Potri.013G053600 ID=Potri.013G053600.1.v4.1 annot-version=v4.1 MQGIRTIRCNLSRFVILARTHLIFSHFEPTHFANLTVERPLSSKFSTAFSSFSTSSLETPITPKHLNEPEECSSDNDDNGSEMENDDDDDDVRGLNLSDD GLFQDAKTIVNILQESCDNRVEMKSKIEQCGIKVSQELVLEVLSRVRNDWEAAFTFFLWAARQPGYAHSVREYHSMISILGKMRKFDTAWVLIDEMRGVK TGVSLVTPQTLLIMIRKYCAVHDVGRAINTFYAYKRFKFDMGIEEFQSLLSALCRYKNVQDAEQLMYCNKAVFPLNTKSFNIVLNGWCNLIGSPRESERV WREMSKRGIRFDVVSYASMMSCYSKAGSLYRVLRLYKQMKKIGIEPDRKVYNAVIHALAKGRLVNEAFNLMRTMEEKGVAPNIVTYNSLIKPLCRARKVE EAKGAFDDMLKRCISPTIRTYHAFLRILRTGEEVFALLEKMRKMGCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGE LDAAHKYYTEMKEKQLLPEPKIDEMLQTWLSNKQIAEGQTTESRSNQCQTTELRSNQLDCSQSREQTRGIPKRSHERNFIRQAETRKVVRERGISFWEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	0	1
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	1.00	0.9196
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	2.00	0.8729
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	6.92	0.8965
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	8.36	0.8584
AT2G39620			Pentatricopeptide repeat (PPR)...		Potri.008G052200 [exp]	9.94	0.8761
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	9.94	0.8563
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	15.16	0.8465
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	17.88	0.8625
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	19.44	0.8705
AT3G18020			Pentatricopeptide repeat (PPR)...		Potri.015G039300 [exp]	20.12	0.8715

Compare expression of checked genes

Potri.013G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.