Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18280 301 / 1e-98 ATAPY2 apyrase 2 (.1.2) AT3G04080 291 / 4e-96 ATAPY1 apyrase 1 (.1) AT2G02970 115 / 1e-28 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14240 113 / 3e-28 GDA1/CD39 nucleoside phosphatase family protein (.1.2.3.4) AT1G14250 109 / 8e-27 GDA1/CD39 nucleoside phosphatase family protein (.1) AT1G14230 104 / 6e-25 GDA1/CD39 nucleoside phosphatase family protein (.1) AT4G19180 63 / 6e-11 GDA1/CD39 nucleoside phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031200 [exp] 340 / 2e-115 AT3G04080 422 / 1e-144 apyrase 1 (.1) Potri.013G053500 [exp] 320 / 1e-107 AT5G18280 637 / 0.0 apyrase 2 (.1.2) Potri.019G031000 [exp] 320 / 2e-107 AT5G18280 617 / 0.0 apyrase 2 (.1.2) Potri.010G169100 [exp] 107 / 3e-26 AT2G02970 606 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.008G086400 [exp] 105 / 3e-25 AT2G02970 635 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.015G079900 [exp] 76 / 4e-15 AT4G19180 276 / 6e-84 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.009G157500 [exp] 74 / 2e-14 AT2G02970 330 / 9e-107 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G236900 [exp] 64 / 3e-11 AT4G19180 840 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Potri.004G195600 [exp] 50 / 9e-07 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006546 [exp] 313 / 4e-104 AT5G18280 647 / 0.0 apyrase 2 (.1.2) Lus10042528 [exp] 311 / 2e-100 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10003270 [exp] 266 / 6e-87 AT5G18280 558 / 0.0 apyrase 2 (.1.2) Lus10012825 [exp] 123 / 1e-31 AT2G02970 605 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10030470 [exp] 122 / 3e-31 AT2G02970 613 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10027686 [exp] 86 / 1e-18 AT4G19180 296 / 8e-92 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10039953 [exp] 84 / 9e-18 AT4G19180 267 / 1e-81 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10037285 [exp] 67 / 3e-12 AT4G19180 871 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10033317 [exp] 59 / 2e-09 AT4G19180 886 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1) Lus10034777 [exp] 59 / 2e-09 AT4G19180 879 / 0.0 GDA1/CD39 nucleoside phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF01150 [poplar] [flax] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family
Representative CDS sequence Show only first row Show all	>Potri.013G053700.4 pacid=42811190 polypeptide=Potri.013G053700.4.p locus=Potri.013G053700 ID=Potri.013G053700.4.v4.1 annot-version=v4.1 ATGGGTTTGATTCCTCTTGCATTGTTGTTAATGGTTTTTGTGCTGCCACCATCAGCAGAGTACGAGCACAGTACAAACCGAAAGATTTTGCCCATTTTGA AGCATTTGGATTCCAGTAGGTATGCAGTTGGTTTTGATGCAGGGAGTAGAGTGCACGTATTTTGTTTCGATCATGGCTTGGCTCTCCTTCCTGTTGGTAA TGGCACTGCTGTTGAGTTTTTTGCCCTGGTAAAACCAGGTTTGAGTGCATATGCTGACGATCCACAAGCAGCGGCTGAGTCACTTGTCCCCTTGCTTGAG GAAGCCGAACGTGCTGTGCCTCAAGCGTGGAGACCCGAGACCCCAGTCAGAGTCGGGGCTACTGCTGGCTTGAGGTCATCGGAAGGCAATAAATCTGAAA AGATTTTGCAAGCAGTCAGGGATCTTTTGAGAGATAGAAGCACCCTGAAGTCTGAAGCAGATGGGGTTTCGATTTTGAAGGGCTCCCAAGAAGGTTCTTT TATGTGGATGGCAATAAACTACTTAGTTGGAAATCTGGGGAAGAAATATTCAGATACAGTTGGAATAGTTGATCTTGGTGGTGGATCTGTTCAAATGGCA TATACCATCTCCCAGGAAAATGCTGCAAATGCTCCACAGAAACCAGATGGACAGGATCCATATGTAAAGGAACTAACCCTGAAGGGAAATGAATATTACC TCTATGTTCACAGTTACTTGTACTGCGGCTTATTGGCAGCTCGAGACGAAATTTTGAAGGTTTCTAAAGATTCTGGCAATCCATGCATCTTGGTTGGTTA TGAAGTTTTGGCTGATCGAGTTGGCAACTTCAAACGAATGAATGTGGAGCTACAGACCTTCAAATTGTGCAAGGTTGGATCCAAATGA
AA sequence Show only first row Show all	>Potri.013G053700.4 pacid=42811190 polypeptide=Potri.013G053700.4.p locus=Potri.013G053700 ID=Potri.013G053700.4.v4.1 annot-version=v4.1 MGLIPLALLLMVFVLPPSAEYEHSTNRKILPILKHLDSSRYAVGFDAGSRVHVFCFDHGLALLPVGNGTAVEFFALVKPGLSAYADDPQAAAESLVPLLE EAERAVPQAWRPETPVRVGATAGLRSSEGNKSEKILQAVRDLLRDRSTLKSEADGVSILKGSQEGSFMWMAINYLVGNLGKKYSDTVGIVDLGGGSVQMA YTISQENAANAPQKPDGQDPYVKELTLKGNEYYLYVHSYLYCGLLAARDEILKVSKDSGNPCILVGYEVLADRVGNFKRMNVELQTFKLCKVGSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Potri.013G053700 [exp]	0	1
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.006G110200 [exp]	15.74	0.6193
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	21.07	0.6076
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G007300 [exp]	27.38	0.5897
					Potri.014G181301 [exp]	35.59	0.6001
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.006G139900 [exp]	54.38	0.4708
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	56.12	0.5683	RHC1.2
ATCG00640		ATCG00640.1, RP...	ribosomal protein L33 (.1)		Potri.003G067400 [exp]	59.16	0.5844
AT5G60390			GTP binding Elongation factor ...		Potri.006G130900 [exp]	59.57	0.5495
AT1G16080			unknown protein		Potri.001G040100 [exp]	61.92	0.5340
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	62.25	0.5790

Compare expression of checked genes

Potri.013G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.