Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39050 253 / 2e-82 ArathEULS3 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031500 [exp] 388 / 3e-135 AT2G39050 243 / 7e-79 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006551 [exp] 273 / 1e-89 AT2G39050 263 / 1e-86 Euonymus lectin S3, hydroxyproline-rich glycoprotein family protein (.1) Lus10003266 [exp] 90 / 6e-22 AT3G04720 89 / 2e-23 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF14200 [poplar] [flax] RicinB_lectin_2 Ricin-type beta-trefoil lectin domain-like
Representative CDS sequence Show only first row Show all	>Potri.013G054100.1 pacid=42812618 polypeptide=Potri.013G054100.1.p locus=Potri.013G054100 ID=Potri.013G054100.1.v4.1 annot-version=v4.1 ATGGAATTCCCTCACGGCTACTACCCTCAAACTCATCACCACCGAAGAAATGATGAAGAAGAAGAGAGAAGAGAACATTACCCACCACCATCCTTCGACC AAACACCACCACCCCTATTCTACAGAGAGAATGAATTTGCACCAGCACCACGACCCTACTCACACTATTATCAAGAATCTCCACAACCACCAAGACCATA TTTTAATGAAACTAACTATTCACCTCCTCCACCACCAACCTCAATTCAAGAAACTCAGGTCTTTCACACATCTTCCTTCGACCAAACACCACCACCCCTA TTCTACGGAGAGAATGAATTTGCACCACCACCACGACCCTACTCACACTATTATCAAGAATCTCCACAACCACCAAGACCATATTTTAATGAAACTAACT ATTCACCTCCTCCACCACCAACCTCAATTCAAGAAACTCAGGTCTTTCACACATCTCATCATCAAGGAGTTGACCCTTCTCTTGATTATCCACCTGCACC AACACAAGTGACTCATGTTTCTCATGAACAAACTGAAGCCCGTCATTCTTTTAGGCCTCACATGCCATCTTTCAATCACCAGCACACTCATCAGCCTGGC GCTGCTTCTGGGCTTGACCTTTATAATAAACCTAGCTTTAAGGTTTACAGCAAAGCTCAGCCTGAGTTTCACCTCACAATTAGGGGTGGGAAAGTGATTC TTGCACCATCAAATCCTTCTGATGAGTTCCAAAACTGGTATAAAGATGAAAAGTACAGCACAAGAGTGAAGGATTCAGAGGGATGCCCTGCCTTCGCTTT GGTTAATAAGGCCACTGGTCAGGCCATGAAGCATTCCATTGGAGAGGCACACCCTGTGCAGCTGATTCCGTACAATCCAGATGTTCTTGATGAGTCTATC CTGTGGACTGAAAGCAAGGACTTGGGTGATGGTTTCAGAGCTGTAAGGATGGTTAACAATACCCATCTTAATGTAGATGCTTTTCACGGTGATAAGAAAT CTGGTGGTGTCCATGATGGCACCTCTATTGTTCTCTGGAAATGGAACAAAGGAGATAACCAACGATGGAAGATCATCCCAACTCGGTACTGA
AA sequence Show only first row Show all	>Potri.013G054100.1 pacid=42812618 polypeptide=Potri.013G054100.1.p locus=Potri.013G054100 ID=Potri.013G054100.1.v4.1 annot-version=v4.1 MEFPHGYYPQTHHHRRNDEEEERREHYPPPSFDQTPPPLFYRENEFAPAPRPYSHYYQESPQPPRPYFNETNYSPPPPPTSIQETQVFHTSSFDQTPPPL FYGENEFAPPPRPYSHYYQESPQPPRPYFNETNYSPPPPPTSIQETQVFHTSHHQGVDPSLDYPPAPTQVTHVSHEQTEARHSFRPHMPSFNHQHTHQPG AASGLDLYNKPSFKVYSKAQPEFHLTIRGGKVILAPSNPSDEFQNWYKDEKYSTRVKDSEGCPAFALVNKATGQAMKHSIGEAHPVQLIPYNPDVLDESI LWTESKDLGDGFRAVRMVNNTHLNVDAFHGDKKSGGVHDGTSIVLWKWNKGDNQRWKIIPTRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Potri.013G054100 [exp]	0	1
AT4G23020			unknown protein		Potri.003G121100 [exp]	4.79	0.7263
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.007G017500 [exp]	12.36	0.6810
AT5G02440			unknown protein		Potri.006G084400 [exp]	18.76	0.6883
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.007G129700 [exp]	22.24	0.6791
AT1G57820		ORTH2, VIM1	VARIANT IN METHYLATION 1, ORTH...		Potri.003G162400 [exp]	22.44	0.6904
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	28.03	0.7088
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G202400 [exp]	32.74	0.6666
AT2G42110			unknown protein		Potri.016G045700 [exp]	35.91	0.6957
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	36.08	0.6917
AT2G38890			unknown protein		Potri.010G217000 [exp]	36.46	0.6376

Compare expression of checked genes

Potri.013G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.