Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09230 254 / 3e-79 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G30260 54 / 7e-08 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G06960 50 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G16380 49 / 5e-06 PAB6 poly(A) binding protein 6 (.1) AT1G49760 45 / 0.0001 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 44 / 0.0002 PABP4, PAB4 poly(A) binding protein 4 (.1) AT1G67770 43 / 0.0003 TEL2 terminal EAR1-like 2 (.1) AT1G22760 43 / 0.0005 PAB3 poly(A) binding protein 3 (.1) AT4G34110 42 / 0.0006 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G031700 [exp] 478 / 3e-168 AT1G09230 273 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.019G121400 [exp] 60 / 5e-10 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 57 / 5e-09 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.005G198500 [exp] 52 / 6e-07 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.002G062700 [exp] 49 / 7e-06 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.002G203600 [exp] 45 / 5e-05 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.014G127800 [exp] 44 / 8e-05 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.002G124200 [exp] 44 / 0.0002 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 44 / 0.0003 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019754 [exp] 532 / 0 AT1G09230 476 / 6e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10016372 [exp] 453 / 3e-156 AT1G09230 392 / 1e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026413 [exp] 57 / 8e-09 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10042240 [exp] 57 / 8e-09 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10002835 [exp] 49 / 1e-05 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 48 / 1e-05 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10008424 [exp] 45 / 7e-05 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10003358 [exp] 45 / 8e-05 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10010042 [exp] 42 / 0.001 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.013G054300.2 pacid=42812008 polypeptide=Potri.013G054300.2.p locus=Potri.013G054300 ID=Potri.013G054300.2.v4.1 annot-version=v4.1 ATGGCTGCTTTTCCTTCTGCACAGAATTTTACGAATACCCAGATGCAGAATTTTGGGTTTCAAGGCACAGAGGTGAAAGCAGAGTCAGTAGAATCACAAG TGATTGTTACCCTTTTGATTAAACACCTCCCTGAAGATATCCCTTTTGACACACTTTCAAGACTTTTCTCTCATTATGGTGCTTTCTCTGTCCGCCCTTG CAATTCTGGAAGATTGAGAAATTGTGCCTTTGTGGATTTCCAAAGTGAAGGACTGGCTTATCAAGCGCATCGTCAGTTAAATGGGCTGAGGTTTCTTGGC AAGGTCTTATCGGTGGAGAGAGCTAGTAAGCTAAATGAGGATAGTAAATTTAAACAAAGTGAGGCTCAACAAGGAAAGGATTCTGTACTACCAACATCTT TGATGAAGGATGCTTCTGTGACTAGAGATGTCATTGAAGGTTCAAATTTTGGGTCCTTACCTGCTAGTGAACCAATTGCACCAAGGCTTGGTGTTGACTA TCCATTTCCTCCTCACTTGGAGTATGCTTACCCTCCACCAGATGGAAACATTCTGACCAACATTGTAAATGCTCTTATTGCTGTTCCTCGCTTCTATACA CAGGTGTTGCATTTGATGAACAAAATGAATATTCCAGCTCCATTTCGAATGGCCCTACCCACTCCACCTCTACCACTGCCACCACCCTCTCCTCCACCAC CACCCCCTCCTCCATGTTTAACTGAAAATTCTTCACTGGCAGAGCAATCTAGTAGCGAGTCAGAAATGGAGTCTTCGGATGAGGAGGTTGATGATAAAGC CCCTTATGGAGCCTCAGGAGCTGTTAAACAAAGAAGAAAACGCATTAAACGGAAAGCAATTGTAGGACCTGCAGCTGATAAAGACGTGGTTCATGAATCT GTTGGCCTGAAACCTGCCTCCTTGGTCCCAAAAGAAATTCCAATTATAAAGAAAAAGAATACCGTGCTGCAGATTAAGATCGCACCAAAAGTAACTCATA ATGAATATAAGGATGATAGCATTATGACAGAATCTGAGGACCCAGGCACAGAGGGTTCAGATCAGAAACACTATGCAACTGCAGAAGAAATAGAGAGTAA AAGGCTCGTTCCAGAGGAAATTTTATCACTTCCAAAGTTTAAGAACTACACAGTTGGGAATCCTGCATCTGTTCTGTACATAAAGAACCTTGACAAAGAA GTGGTTGCTGATGATTTCTTCTACATATTTGGATCACTATTTGGAAGCATTGATGCAGCTAAAAGTGGCCTCAGTGTCAAGTTGATGCAGGAGGGAAGAA TGAGGGGTCAAGCTTTTGTAACGTTTTCATCAGTTGAACTTGCCCATCAAGCTCTGAATCTAGTGAATGGATATGTATTCAAAGACAAACCGATGATCAT ACAATTTGGTCGGAATCCTTCAGCTGCCAAGCCAAATTAG
AA sequence Show only first row Show all	>Potri.013G054300.2 pacid=42812008 polypeptide=Potri.013G054300.2.p locus=Potri.013G054300 ID=Potri.013G054300.2.v4.1 annot-version=v4.1 MAAFPSAQNFTNTQMQNFGFQGTEVKAESVESQVIVTLLIKHLPEDIPFDTLSRLFSHYGAFSVRPCNSGRLRNCAFVDFQSEGLAYQAHRQLNGLRFLG KVLSVERASKLNEDSKFKQSEAQQGKDSVLPTSLMKDASVTRDVIEGSNFGSLPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYT QVLHLMNKMNIPAPFRMALPTPPLPLPPPSPPPPPPPPCLTENSSLAEQSSSESEMESSDEEVDDKAPYGASGAVKQRRKRIKRKAIVGPAADKDVVHES VGLKPASLVPKEIPIIKKKNTVLQIKIAPKVTHNEYKDDSIMTESEDPGTEGSDQKHYATAEEIESKRLVPEEILSLPKFKNYTVGNPASVLYIKNLDKE VVADDFFYIFGSLFGSIDAAKSGLSVKLMQEGRMRGQAFVTFSSVELAHQALNLVNGYVFKDKPMIIQFGRNPSAAKPN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Potri.013G054300 [exp]	0	1
AT4G10070			KH domain-containing protein (...		Potri.019G072500 [exp]	2.44	0.8673
AT4G38890			FMN-linked oxidoreductases sup...		Potri.009G125500 [exp]	2.64	0.8724
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	10.19	0.8719
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	10.58	0.8647
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.017G124500 [exp]	13.22	0.8452
					Potri.018G138206 [exp]	18.00	0.8536
AT3G04130			Tetratricopeptide repeat (TPR)...		Potri.010G055500 [exp]	20.49	0.8159
AT1G28530			unknown protein		Potri.004G051000 [exp]	20.49	0.8118
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	21.21	0.8220
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	23.08	0.8337	LUG.1

Compare expression of checked genes

Potri.013G054300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.