Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09220 487 / 9e-169 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 301 / 2e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 301 / 6e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 298 / 1e-94 MEF21 mitochondrial editing factor 21 (.1) AT5G66520 292 / 1e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33350 290 / 1e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 292 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 285 / 9e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 285 / 1e-88 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05750 273 / 2e-85 PDE247, CLB19 pigment defective 247, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369900 [exp] 320 / 3e-102 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 306 / 1e-97 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 303 / 1e-96 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.007G050200 [exp] 301 / 7e-95 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 296 / 2e-94 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G035900 [exp] 300 / 3e-94 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 298 / 6e-94 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G202600 [exp] 294 / 3e-93 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G191200 [exp] 293 / 1e-91 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003133 [exp] 593 / 0 AT1G09220 476 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011341 [exp] 590 / 0 AT1G09220 462 / 4e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005987 [exp] 311 / 5e-100 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 296 / 1e-94 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10029344 [exp] 298 / 6e-94 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031661 [exp] 287 / 1e-89 AT2G29760 427 / 3e-141 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 288 / 8e-89 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 285 / 1e-88 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023592 [exp] 285 / 2e-88 AT1G74630 840 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 284 / 2e-88 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.013G054400.1 pacid=42811677 polypeptide=Potri.013G054400.1.p locus=Potri.013G054400 ID=Potri.013G054400.1.v4.1 annot-version=v4.1 ATGACTACATGTATGCATGCAAGTTGTGGAAAGCCAAGGCACCTTGCAAGTATGCTTAGGTTGACAAGGCCATGCTTTGTTTACTTCACAAACAAAACAA TAGCAAGAACAGCAAAAGCATCCCTTTGTTTTCTAACCTCACAAAGGTTATTTACAACAATCAAACAAGAAGAACAAAAACTAAGCCACTTGCTCACTCT GTTACTCCAGAACCCAACAAAAACCCACCAACCAACCCTACAAGTCCACTCATTTCTACTATCCACTGGCTTATTAAGCCATTCAATTCTGCTCTTCAAC ACCCTGCTTAGACTCTATTCTTTTGGTGATCAGCCCCACCTAGCTTTCTTGCTCTACAAACAGATGCAAGAAGTTTACTTTCACTCTTCTTCATTGCCTC CCCCTTCATTTGATAGCTTTACCTACTTTTTCCTCGTAAATACTAGCACTAACTGTTCTTGTCCAATTCTTGGAACTCAGTTTCATAGTCGTATATTCAA AGTGGGTTTTCAATATCATGTTTATGTACAAACTGCTCTTTTGAATATGTACTTATCTAGTGGGGTTTTAGGTGATGCTATGATTTTGTTTGATGAAATG CCCAAGAGAAATGTGGTTACTTGGAATGTGATGATTACTGGGCTGGTTAAATGGGGTAAACTTGAATTTGCTAGTTCTCTCTTTGATGAGATGCCTGAAA AGAATGTTGTTTCATGGACTGGAATAATTGATGGGTATATCAGAAACAACAAGTATAGTGAGGGTTTGTCTTTGTTTCGAAGAATGGTTGTGTGTGAGGG TATAAAGCCTACTGAAATAACTATTCTTGCAATTTTACCGGCTATTTCTAATATGGGGGAGTTAAAATCTTGCAGCTTGATCCATGGTTATGCAGAGAAA AGAGGATTTAATGCTTTTGATATACGTGTTGCTAATTCGATTATAGATTGTTATTCGAAATGTGGTTGCATAGCGAGTGCCTTTAAGTTTTTTGAGGATA TTTCGGTGGAGAGGAAGAATTTGGTATCATGGACATCCATCATTTCCGGGTTTGCAATGCATGGGATGTGGAAGGAAGCGGTGGAATATTTTGAAAGGAT GGAGAAAGCAGGTTTGAAGCCAAATAGAGTGACATTCTTGAGTGTTTTGAATGCTTGTAGCCATGGCGGATTGGTTGACGAGGGGCTTAGGTGTTTTTAC AAGATGGTGAATGAGCATGGAGTTTTGCCTGATATTAAGCATTATGGGTGTGTAGTAGACATGTTGGGGAGGACAGGGAGGCTAGAAGAAGCAGAGAATA TGGCTTTAGAGATTCCTAGTGAGATTGTTAATGTTGTGATTTGGAGGACCCTGTTGGGTGCATGTAGCTTTCATGGTAATGTTGAGATGGGTGAGAGGGT TACAAGGAAGATAATGGAGATGGAGAGAGGATACGGAGGTGACTATGTGCTTATGTATAACATCTTTGCTGGTGCTGGACGGTATGAGGATGCTGAGAGG TTGAGAAAACTGATGAACAAGAGAAATGCCTTTAAACTTCCTGGCAATAGTTTGGTGTGA
AA sequence Show only first row Show all	>Potri.013G054400.1 pacid=42811677 polypeptide=Potri.013G054400.1.p locus=Potri.013G054400 ID=Potri.013G054400.1.v4.1 annot-version=v4.1 MTTCMHASCGKPRHLASMLRLTRPCFVYFTNKTIARTAKASLCFLTSQRLFTTIKQEEQKLSHLLTLLLQNPTKTHQPTLQVHSFLLSTGLLSHSILLFN TLLRLYSFGDQPHLAFLLYKQMQEVYFHSSSLPPPSFDSFTYFFLVNTSTNCSCPILGTQFHSRIFKVGFQYHVYVQTALLNMYLSSGVLGDAMILFDEM PKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGIIDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEK RGFNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVEYFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFY KMVNEHGVLPDIKHYGCVVDMLGRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGYGGDYVLMYNIFAGAGRYEDAER LRKLMNKRNAFKLPGNSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09220			Pentatricopeptide repeat (PPR)...		Potri.013G054400 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.009G035100 [exp]	4.12	0.8767
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.006G105700 [exp]	7.74	0.8705
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	10.95	0.8638
AT1G13410			Tetratricopeptide repeat (TPR)...		Potri.008G121400 [exp]	11.61	0.8679
AT1G71420			Tetratricopeptide repeat (TPR)...		Potri.013G098800 [exp]	12.72	0.8519
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	15.16	0.8465
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	16.24	0.8483
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	17.88	0.8525
AT2G36980			Tetratricopeptide repeat (TPR)...		Potri.010G020500 [exp]	20.44	0.8287
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	20.78	0.8481

Compare expression of checked genes

Potri.013G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.