Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12380 144 / 1e-40 ANNAT8 annexin 8 (.1) AT1G35720 137 / 8e-38 ATOXY5, ANNAT1 annexin 1 (.1) AT5G65020 135 / 5e-37 ANNAT2 annexin 2 (.1.2) AT2G38760 130 / 2e-35 ANN3, ANNAT3 annexin 3 (.1) AT5G10220 123 / 2e-32 ANN6, ANNAT6 ANNEXIN ARABIDOPSIS THALIANA 6, annexin 6 (.1) AT5G10230 122 / 2e-32 ANN7, ANNAT7 annexin 7 (.1) AT1G68090 109 / 2e-27 ANN5, ANNAT5 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) AT2G38750 100 / 5e-24 ANNAT4 annexin 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G041900 [exp] 155 / 1e-44 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.015G031800 [exp] 151 / 4e-43 AT1G68090 356 / 3e-123 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Potri.002G095600 [exp] 148 / 6e-42 AT1G35720 481 / 1e-172 annexin 1 (.1) Potri.005G075900 [exp] 137 / 6e-38 AT5G65020 472 / 3e-169 annexin 2 (.1.2) Potri.001G024800 [exp] 137 / 6e-38 AT2G38760 395 / 1e-138 annexin 3 (.1) Potri.007G092500 [exp] 137 / 1e-37 AT5G65020 488 / 2e-175 annexin 2 (.1.2) Potri.003G200700 [exp] 136 / 2e-37 AT5G12380 399 / 3e-140 annexin 8 (.1) Potri.001G277500 [exp] 125 / 2e-33 AT5G12380 442 / 3e-157 annexin 8 (.1) Potri.001G024900 [exp] 114 / 3e-29 AT2G38750 371 / 2e-129 annexin 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010666 [exp] 268 / 3e-88 AT5G12380 118 / 6e-31 annexin 8 (.1) Lus10003611 [exp] 157 / 3e-45 AT1G35720 476 / 1e-170 annexin 1 (.1) Lus10008227 [exp] 156 / 3e-45 AT1G35720 476 / 9e-171 annexin 1 (.1) Lus10009225 [exp] 142 / 7e-40 AT1G68090 358 / 3e-124 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10019780 [exp] 141 / 2e-39 AT5G12380 372 / 1e-129 annexin 8 (.1) Lus10023530 [exp] 141 / 2e-39 AT1G68090 350 / 4e-121 ANNEXIN ARABIDOPSIS THALIANA 5, annexin 5 (.1) Lus10024172 [exp] 140 / 5e-39 AT2G38760 349 / 1e-120 annexin 3 (.1) Lus10039550 [exp] 138 / 7e-38 AT2G38760 323 / 2e-109 annexin 3 (.1) Lus10036470 [exp] 137 / 7e-38 AT1G35720 406 / 3e-143 annexin 1 (.1) Lus10024054 [exp] 135 / 4e-37 AT5G65020 400 / 6e-141 annexin 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00191 [poplar] [flax] Annexin Annexin
Representative CDS sequence Show only first row Show all	>Potri.013G055000.1 pacid=42811053 polypeptide=Potri.013G055000.1.p locus=Potri.013G055000 ID=Potri.013G055000.1.v4.1 annot-version=v4.1 ATGGGTACCAAAATCTTGACCTCTTCTAGCCATGGCTTTGAGAATGAATGCAAAGAGATTCATGATTCTTGGGGAAGGTTAAACCACTTGGTTCGATCAT TGGCTGGCAGGTCCAAGCTTGAAAGGCAACAGATTAGAGAGACTTACAAGGCCATGTATGGAGAAGATATGGCCATTCTTCTCCAAAAGATGCAATTCCA AAACGGATCAAAAGTATGTGCAGCTTTATATAGGTGGATGATGGACACACATGAACGTGATGCTATTGTTGCAAGGGAAGCTTTTGGACAAGGTGATGTT AACTACAAGGCTCTTGTTGAGATTTTTGTCGGGCGAAAATCAAGTCATATGGTTCTCATCAAACAGGCTTATTATGCAAGATTCAGAAGGCATTTGGACC AAGAAATTATCAATCTTGAGCCACCCCATCCTTACCAAAAGATTCTTGTAGCGTTGGCTACATCACACAAGGCACACCAGGAAGATGTTAGCCAACATAT TGCAAAATGTGATGCTAGGAGGCTATATGAAGCAGGGGAAGGGAGTTCACAGGGAGCCGTTGAAGAAGCTGTTGTGCTTGAGATTCTGAGTAAAAGGAGC ATTCCACAGACGAAATTGACCCTGTCTAGCTATAAACACATTTATGGACATGAGTACACAAAGTCGCTCAAAAATGCAAAATACATGGAATTTGAAGATG CTCTTAAAGTAGTTATGAAATGCATGTGCAATCCACCTACTTATTACGCAAAGGTACTGTATACGAGTATTAAAGGGACAACAGCAGACAATGGTGCCTT GGCTCGTGTGATGATAAGCAGAGCTGAGGTAGACTTGTATGAGATACGAAGCATTTTCAAGAGAAAGTATGGGATGGAACTGAAAGATGCAATATGTGAG AGAATCCCATCTGGGGATTACAGAGATTTTCTTGCTGCTATAGCCTCGACCACTACTATTATTACAAGCCACAATTCTGTTTCTCTCTAG
AA sequence Show only first row Show all	>Potri.013G055000.1 pacid=42811053 polypeptide=Potri.013G055000.1.p locus=Potri.013G055000 ID=Potri.013G055000.1.v4.1 annot-version=v4.1 MGTKILTSSSHGFENECKEIHDSWGRLNHLVRSLAGRSKLERQQIRETYKAMYGEDMAILLQKMQFQNGSKVCAALYRWMMDTHERDAIVAREAFGQGDV NYKALVEIFVGRKSSHMVLIKQAYYARFRRHLDQEIINLEPPHPYQKILVALATSHKAHQEDVSQHIAKCDARRLYEAGEGSSQGAVEEAVVLEILSKRS IPQTKLTLSSYKHIYGHEYTKSLKNAKYMEFEDALKVVMKCMCNPPTYYAKVLYTSIKGTTADNGALARVMISRAEVDLYEIRSIFKRKYGMELKDAICE RIPSGDYRDFLAAIASTTTIITSHNSVSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.013G055000 [exp]	0	1
					Potri.017G142923 [exp]	41.46	0.8170
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	75.29	0.7863
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.014G032600 [exp]	79.18	0.7802
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	87.42	0.7871
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.006G097300 [exp]	110.63	0.7808
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.019G022002 [exp]	123.40	0.7700
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	136.05	0.7684
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	151.21	0.7455	ATHB13.3
AT2G23440			unknown protein		Potri.007G041400 [exp]	151.44	0.7584
AT5G05280			RING/U-box superfamily protein...		Potri.001G159300 [exp]	155.77	0.7445

Compare expression of checked genes

Potri.013G055000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.