Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03790 1320 / 0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein AT5G63860 132 / 1e-32 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G60870 127 / 6e-31 RUG3 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) AT5G12350 120 / 2e-27 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 111 / 1e-24 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G42140 108 / 9e-24 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G27060 101 / 1e-22 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 101 / 2e-22 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G16040 100 / 3e-22 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 102 / 1e-21 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100200 [exp] 137 / 5e-34 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.017G139600 [exp] 122 / 6e-28 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G000600 [exp] 111 / 2e-25 AT5G60870 534 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Potri.004G080900 [exp] 110 / 3e-24 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G101800 [exp] 106 / 4e-24 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.005G190000 [exp] 109 / 6e-24 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.002G070300 [exp] 106 / 4e-23 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G113200 [exp] 102 / 9e-23 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.015G107000 [exp] 102 / 1e-22 AT1G27060 446 / 1e-156 Regulator of chromosome condensation (RCC1) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013648 [exp] 1380 / 0 AT3G03790 1249 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Lus10010659 [exp] 1375 / 0 AT3G03790 1245 / 0.0 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein Lus10039618 [exp] 128 / 5e-31 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10029536 [exp] 125 / 5e-30 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10042215 [exp] 113 / 4e-26 AT5G60870 547 / 0.0 RCC1/UVR8/GEF-like 3, Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2), Regulator of chromosome condensation (RCC1) family protein (.3) Lus10035957 [exp] 108 / 1e-24 AT5G08710 504 / 1e-178 RCC1/UVR8/GEF-like 1, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10036030 [exp] 111 / 2e-24 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 108 / 9e-24 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036737 [exp] 107 / 2e-23 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10037192 [exp] 105 / 9e-23 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00415 [poplar] [flax] RCC1 Regulator of chromosome condensation (RCC1) repeat CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.013G055300.5 pacid=42811311 polypeptide=Potri.013G055300.5.p locus=Potri.013G055300 ID=Potri.013G055300.5.v4.1 annot-version=v4.1 ATGGAGGTCCTGGTTTCACCACAAGGACAAAAATATAATTTGCAAACAGCTGCTCAGAAATTTTCATCTGGTGGTTCACAGAAGGATCTGTGGCATGTCG TGCGAGAAGGATCGTTGGCTGATGTGGATTTGGCATTGGCACTACATAAGAAGAATGGAGGAAATATTAATGCAAGAAATGTGTTTGGCCTGACTCCTCT TCATATTGCAACTTGGAGAAACCACATTCCCATTGTTAAGAGGCTTCTTCTAGCTGGCGCTGACCCTGATGCTAGGGATGGAGAATCAGGATGGAGTAGC CTTCACAGGGCTTTGCATTTTGGTCATCTTGCAGTTGCAAGTATCCTCCTTCAGTCTGGTGCTTCCACTACATTGGAGGACTGTAAGTCCCGAACACCAG TCGATCTCCTGTCTGGCCCTGTATTGCAGGTCATCAGAGATGGTTATAATTCAGTGGCTACCGAGGTGTTTAGTTGGGGAAGTGGTGCCAATTATCAACT TGGAACTGGAAATACTCACATACAAAAGCTACCTTGTAAAGTTGATGCACTTCATGGCTCTTTTGTTAAATTAGTCTCTGCTGCTAAGTTTCATAGTGCA GCAGTTAGTGCCAGTGGAGAAGTCTACACATGGGGATTTGGAAGAGGGGGCCGCCTTGGGCATCCTGAATTTGATATCCACAGTGGCCAAGCTGCAGTTA TCACTCCCCGTCAGGTGACTTCTGGTTTAGGATCCCGCCGGGTGAAGGCAATTGCAGCTGCTAAACACCACACTGTTCTTGCTACGGAGGGTGGGGAAGT TTTTACCTGGGGTTCCAATAGAGAGGGTCAGCTTGGGTACACTGTGGACACTCAACCCACTCCTCGTAGGGTAAGTTCCCTTAGGTCAAGGATTGTTGCT GTTGCTGCAGCAAACAAACACACTGCTGTAGTGTCTGATTCTGGTGAAGTTTTCACTTGGGGTTGCAATAGAGAGGGTCAACTTGGGTATGGAACCTCTA ACTCAGCATCCAATTACACTCCAAGAGCTGTCGAGTACTTGAAAGGCAAAGTTTTGACAGGAGTTTCAGTGGCAAAATACCACACTATTGTATTGGGGGC TGGTGGAGAGGTTTATACTTGGGGTCACCGACTGGTTACACCAAGACGTGTTGTGATTGCTAGAAATTTAAAGAAAAGTGGGAATACCCCTTGGAAATCT CATCGCTTGGAACGACTTCATGTGGCTGCTATTGCTGCTGGGATGGTGCATAGCTTGGCTCTAACAGATGATGGCACATTATTTTATTGGGCATCTGCAG ATCCTGATCTTCGATGCCAACAGCTGTATTCATTGTGTGGAAACAATATCGTTAGCATTTCCACAGGAAAGTATTGGGCTGCTGTAGTTACAGCTACAGG CGATGTTTACATGTGGGATGGAAAAAAGGGAAAGGATGAGCCACCAGCTGTCACTCGATTACATGGTGTGAAAAAGGCCACGTCAGTTTCAGTTGGGGAA ACACATTTATTGATTGTTGGTTCCCTCTATCACCCTATCTATCCATCCAGTGATGACAAGAGTCCTCAAACACAGATGGTGCAAGTTAGGGATGAAATAG AGGAGCTTGAAGAAGATAGTATGTTTAATGATGCAGAGTCTAATCATATGTTATCCGTTGTAGAGAAGGATGATTCTGGCCTAAAGTCCATACCAAGCTT AAAAGCTCTTTGTGAAAAAGCAGCTGCAGAAAGTCTGGTTGAGCCACGAAATGTTATACAAATGCTTGAAATTGCCGATTCACTTGGAGCAGAAGATCTG AGGAAGCATTGTGAGGATATTGCCATTCACAACCTTGATTATATTTTAACAGTCTCATCACATGCTTTTGGTAGTGCCTCACCTGAAATTCTTGCTAATC TTGAAAATCTGTTAGACCAAAGGTCATCTGAACCTTGGAGCTATCGTAGTCTTCCAACTCCAACAGCTACTCTTCCTGTCATTATCAATATTGAGGAAGA TGGTGAAAGCGAGGTTTCAAGGACTCGTGACAATTACAGTGACAAATCCACCCCAAGGAGTGTAATAGATCAACAATTAAATTCCTTCCTACAACCCAAA GATGATCCTATTTCCAAACAAGTTCGGGCTTTACGAAAGAAGTTGCAGCAGATTGAGATGCTTGAGACAAAGCAATCTAAGGGGCATATTCTTGACGATC AACAAATTGCAAAACTTCAGACAAGATCAATTCTTGAAAGTTCACTGGCTGAACTTGGTGCTCCAGTTGAAACAGCACTGGTAAAAGCATCATCTTCAGT ATCACCGGATGAGAAGGGGAGCAAAAAATCTGAGGTATCAAGAAAACAAAGAAGAAAGAGCAAACAACAGGCAGAACAAAGGGAAATGCCATCTGCTTTT ACTAGCACTGATGCAGAATCCAGTTCTGTAAAGAATTTCATGGATGTTGAGGTCTCGCAATTTCCCACAAATAAGGAGGAAGAGACCACGTTTGGTGGAA GTGTGGTGAACCGAACTTCTAAAGAGATCGGATTCTTTGTTCAGAAGAAATCAGGTTCAGACTTGCCAAAAAATAAGATTTCATCTCCAGCAGTATCCAA GAAAAAGAACCGCAAGGGTGGGCTTTCCATGTTCTTGAGTGGTGCCCTGGATGAGGTCCCCAAAGATGCTGCTCCCCCTCCACCAACACCCAGAAGTGAG GGTCCTGCATGGGGTGGGGCTAAGGTTTCAAAGGAATCTGCTTCACTTCGTCAAATACAGGATGAACAGAGCAAAACCAAATTGAATATACCAACTAGGA ACAAAGATCAGGTGGAAGATCATTTTGATAGTAGAAGTGATGGAAAAGTTTTGTTGAGCTCACTTATGCCTTCCAAACCAATTCCTTTGGTGTCAGTACC AGCATCACAGGCATCTGATGCAGAAATAAACACACCCTCATGGGCTTCGGGGACTCCTCCACTTCTTTCTCGACCATCACTTAGAGACATCCAAATGCAG CAGGGAAAGCGACATCAAAGTATATCCCATAGTCCGAAGATGAAAACACATGGATTCTCAGTTTCCACAGGTCAGGGCTCGCCATCAGATTCTCCAGGAA TGAACCGCTGGTTCAAACCTGAGGTTGACACTCCCTCATCGATCCGTTCGATTCAGATCGAGGAAAAGGCTATGAAGGATCTGAAGCGCTTCTACAGTAG TGTTAAGATTGTCAAGAACCCATCTTAA
AA sequence Show only first row Show all	>Potri.013G055300.5 pacid=42811311 polypeptide=Potri.013G055300.5.p locus=Potri.013G055300 ID=Potri.013G055300.5.v4.1 annot-version=v4.1 MEVLVSPQGQKYNLQTAAQKFSSGGSQKDLWHVVREGSLADVDLALALHKKNGGNINARNVFGLTPLHIATWRNHIPIVKRLLLAGADPDARDGESGWSS LHRALHFGHLAVASILLQSGASTTLEDCKSRTPVDLLSGPVLQVIRDGYNSVATEVFSWGSGANYQLGTGNTHIQKLPCKVDALHGSFVKLVSAAKFHSA AVSASGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVTSGLGSRRVKAIAAAKHHTVLATEGGEVFTWGSNREGQLGYTVDTQPTPRRVSSLRSRIVA VAAANKHTAVVSDSGEVFTWGCNREGQLGYGTSNSASNYTPRAVEYLKGKVLTGVSVAKYHTIVLGAGGEVYTWGHRLVTPRRVVIARNLKKSGNTPWKS HRLERLHVAAIAAGMVHSLALTDDGTLFYWASADPDLRCQQLYSLCGNNIVSISTGKYWAAVVTATGDVYMWDGKKGKDEPPAVTRLHGVKKATSVSVGE THLLIVGSLYHPIYPSSDDKSPQTQMVQVRDEIEELEEDSMFNDAESNHMLSVVEKDDSGLKSIPSLKALCEKAAAESLVEPRNVIQMLEIADSLGAEDL RKHCEDIAIHNLDYILTVSSHAFGSASPEILANLENLLDQRSSEPWSYRSLPTPTATLPVIINIEEDGESEVSRTRDNYSDKSTPRSVIDQQLNSFLQPK DDPISKQVRALRKKLQQIEMLETKQSKGHILDDQQIAKLQTRSILESSLAELGAPVETALVKASSSVSPDEKGSKKSEVSRKQRRKSKQQAEQREMPSAF TSTDAESSSVKNFMDVEVSQFPTNKEEETTFGGSVVNRTSKEIGFFVQKKSGSDLPKNKISSPAVSKKKNRKGGLSMFLSGALDEVPKDAAPPPPTPRSE GPAWGGAKVSKESASLRQIQDEQSKTKLNIPTRNKDQVEDHFDSRSDGKVLLSSLMPSKPIPLVSVPASQASDAEINTPSWASGTPPLLSRPSLRDIQMQ QGKRHQSISHSPKMKTHGFSVSTGQGSPSDSPGMNRWFKPEVDTPSSIRSIQIEEKAMKDLKRFYSSVKIVKNPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03790			ankyrin repeat family protein ...		Potri.013G055300 [exp]	0	1
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	15.00	0.6794
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Potri.010G111700 [exp]	15.39	0.7530
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.002G256300 [exp]	22.62	0.7356	Pt-SDD1.1
AT5G19010		ATMPK16	mitogen-activated protein kina...		Potri.008G200800 [exp]	38.18	0.5996	ATMPK16.2
AT2G45290			Transketolase (.1)		Potri.014G068200 [exp]	85.69	0.6789
AT3G55580			Regulator of chromosome conden...		Potri.008G059800 [exp]	88.14	0.5972
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	114.89	0.6393
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Potri.006G181700 [exp]	165.98	0.6507
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Potri.010G221500 [exp]	174.58	0.6009	PABAS
AT3G06760			Drought-responsive family prot...		Potri.011G057200 [exp]	184.82	0.5922

Compare expression of checked genes

Potri.013G055300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.