Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17980 1233 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G74720 817 / 0 QKY QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 746 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 733 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 732 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 729 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G51570 721 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G48060 715 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G03680 697 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 687 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G098700 [exp] 830 / 0 AT1G74720 1272 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G113800 [exp] 820 / 0 AT1G74720 1521 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 771 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 758 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 754 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 754 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 746 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 739 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 733 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010658 [exp] 1205 / 0 AT5G17980 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033097 [exp] 828 / 0 AT1G74720 1566 / 0.0 QUIRKY, C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 753 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 750 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 748 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 738 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 738 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 720 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 659 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 637 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.013G055500.1 pacid=42810752 polypeptide=Potri.013G055500.1.p locus=Potri.013G055500 ID=Potri.013G055500.1.v4.1 annot-version=v4.1 ATGGCCACGAAGCAGAAACTAATAGTTGAAGTTGTTGATGCCCGGAATCTCTTACCAAAAGATGGCCATGGAAGCTCGAGTCCATACGTCGTGATCGATT TCTATGGGCAAAGAAAGAGGACGAAATCAGCAATTCGTGACTTGAACCCAACATGGAATGAAACGCTTGAGTTCAATGTTGGTAAGCCATCTAATGTTTT TGGGGACATGCTTGAGCTCGATGTTTACCATGACAAGAATTATGGTCCAACTAGAAGAATCAACCATCTTGGTAGAATTAGATTAAGTTCGAGCCAGTTT GTTAGAAAAGGCGAGGAGGCTTTGATATATTATCCCTTGGAGAAAAAATACTTGTTTAGTTGGACACAAGGTGAGATCGGATTAAGGATCTATTACCAGG ATGAAGTTACACCACCACCACCACCACCACCACAGCCAGCAGCAGCACGGGAAGAGGAAGCGAAAGCGGACACGAACCAGGAGTCTTCACCACCACAGCC AACTGCTGAAGCAGCGGCGCCAGCAGAATCTGAAGCAACACAACCAGCTGAAGCTCAGAAATCTGATGTAGAAACAGGGGCAACGACAGAGTCAAACAAA GAGCAACCTGCTGAAGAGGCAAAGTCCAATGAGGAACCACCAGCTCAAGCTGAAGCAGCGGCAGCACCACCACCTTCAGATAATGCACCAGCACCTATTC AAGTTGATAAACCACCAGAATCTGATGTGGGACCATCACCACCTCCACAAGGACCTGGTGGTCAAAACAAAGAGGACCCGTCACCTTCCTCAGCAGCAGT AAACGAGCCTGCTCAAGAAGACGGTGATGGTATCGTCTTAGAGCCAACATTCAGAAAGTGGGGCCCGGCACCACCAGAGATCGTGGCAGCTTCGACAGGA TCGTTTCCCGAAATCAAAGTATCAGGAATCAACGCTCCACAACCCATCATAAGGCCAGTGGCTCCAACCTCGAATTACACACTGGAACCACAGGAAAGTA TTTCAATTGAGCGGTCAGCGTTTGATCTAGTTGAAAAGATGCATTACTTGTTTGTTCGGGTAGTGAAGGCTCGGTACCTACCAACCAGTGGGAACCCGGT TGTAAGGATTGAGGTTTCAAACAGCCGCGTACAATCAAAACCCGCCAGGAAAACATTATGCTTCGAGTGGGACCAGACTTTTGCATTTGGCCGCGATGCA CCCGACTCCTCCTCCATAGTCGAGATTTCAGTGTGGGACCCACATGACCCTAAATCATCCGAGATGGCAGCAGCGGCGAATTTCCTAGGTGGAATTTGCT TTGATGTGACGGAGATCCCATTGCGGGACCCACCGGACAGCCCACTGGCCCCACAATGGTACAGGCTGGAAGGAGGTGGAGCCTACAGAAGCGATTTGAT GCTTGCCACGTGGGTAGGCACACAAGCTGATGATTCATTCCCTGATGCTTGGAAGACCGACACAGCCGGCAACATCAACTCTAGAGCTAAAGTCTACTTG TCTCCAAAGTTATGGTACCTCAGAGCTACTGTATTAGAAGCCCAGGACATTTTTCCGTTGATGCCGTTAAAAGAAACCGCAGTTCAAGTCAAAGCCCAAC TAGGTTTCCAAGTGCAAAAAACAAAGACTTCAGTCTCACGTAACGGCACTCCGTCATGGAACGAGGATTTATTATTTGTAGCGGCGGAGCCATGTAGTGA TCAATTGATTTTCACATTAGAAAACCGGCAACCAAAAGGGCCGGTTACAATCGGGATGGTGAGGATCGCACTTTCAGCTACCGAGAGGCGGGTAGATGAC AGGAAAGTGGCGTCTAGGTGGTTCAGCTTGGAAGATCCAAGGAGTGAAAAAGCGGGCTACAGAGGTAGGGTCCAGTTGAGGTTATGTTTCGATGGTGGGT ACCACGTGATGGATGAAGCAGCGCACATGAGCAGCGATTACAGGCCAACGGCAAGGCAACTGTGGAAGCAACCGGTGGGGACTTTTGAGCTGGGTATCAT TGGGTGCAAGAATTTATCACCGATGAAAACGGTAGACGGTAAGGGCTGTACTGATGCTTATTGTGTGGCGAAGTACGGTCCCAAATGGGTCCGAACCAGA ACTGTGTGTGATAGCTTAGATCCTAAATGGAATGAGCAGTACACGTGGAAGGTTTACGACCCATGTACCGTGTTGACTATTGGGGTCTTTGATAGCTCGG GAGTATACGAGATCGATGGTGATAAAACTGCCACGCGTCCTGATTTTCGTATGGGGAAAGTCCGAGTACGTCTATCTAACTTGGAGACGGGTAAAGTGTA TAGAAATAGATATCCCTTGATTTTGTTGACTAATAATGGCGTTAAGAAAATGGGAGAGATTGAAGTGGCTGTAAAATTTGTTCGTGCAACTCCAACACTG GATTTCTTACACGTGTACACACAACCCCTGTTGCCGTTGATGCATCATCTGAAGCCATTGGGGGTGGTCCAACAAGAATTGCTGAGGAACTCAGCAGTTA AGATAATAGCCACACACTTGTCAAGATCCGAGCCATCGCTGCGACGAGAGGTGGTGTCTTACATGCTTGATGTGGACACACATGCATTTAGTATGAGGAA GATACGAGCCAATTGGATTAGGATTATCAACGTGATTGCTAGCGTGATTGATATCGTACGATGGATCGATGATACACGTGTATGGAAGAATCCAACGTCT ACAGTACTTGTGCATGCATTGCTAATCATGCTTGTGTGGTTCCCTGATTTAATTGTCCCCACATTAGCATTTTATGTGTTTGTGATTGGCGCTTGGAATT ATAGGTTTCGGTCAAGGGCGCCATTGCCGCACTTTGATCCCAAGCTCTCACTGGCTGATAGTGCTGATCGTGATGAACTTGATGAGGAGTTTGATCCCCT GCCGAGTTCTAGGCCGCCGGAGATGGTGCGCACAAGGTACGATAAGATGCGCATGCTTGGGGCACGTGTGCAGACGGTGTTGGGGGATTTTGCCACGCAA GGGGAACGGTTGCAAGCACTGGTGACATGGAGGGACCCGCGAGCCACGGGGATCTTTGTGGGGCTGTGTTTTGTGGTGGCAATGATCCTCTATATGGTAC CCTCCAAGATGGTGGCTATGGCATCAGGATTCTATGTTTTCCGGCATCCGATATTCCGTGATAGAATGCCATCGCCGGCATTGAACTTCTTTAGGAGGCT CCCTTCATTGTCTGATCGAATCATGTAA
AA sequence Show only first row Show all	>Potri.013G055500.1 pacid=42810752 polypeptide=Potri.013G055500.1.p locus=Potri.013G055500 ID=Potri.013G055500.1.v4.1 annot-version=v4.1 MATKQKLIVEVVDARNLLPKDGHGSSSPYVVIDFYGQRKRTKSAIRDLNPTWNETLEFNVGKPSNVFGDMLELDVYHDKNYGPTRRINHLGRIRLSSSQF VRKGEEALIYYPLEKKYLFSWTQGEIGLRIYYQDEVTPPPPPPPQPAAAREEEAKADTNQESSPPQPTAEAAAPAESEATQPAEAQKSDVETGATTESNK EQPAEEAKSNEEPPAQAEAAAAPPPSDNAPAPIQVDKPPESDVGPSPPPQGPGGQNKEDPSPSSAAVNEPAQEDGDGIVLEPTFRKWGPAPPEIVAASTG SFPEIKVSGINAPQPIIRPVAPTSNYTLEPQESISIERSAFDLVEKMHYLFVRVVKARYLPTSGNPVVRIEVSNSRVQSKPARKTLCFEWDQTFAFGRDA PDSSSIVEISVWDPHDPKSSEMAAAANFLGGICFDVTEIPLRDPPDSPLAPQWYRLEGGGAYRSDLMLATWVGTQADDSFPDAWKTDTAGNINSRAKVYL SPKLWYLRATVLEAQDIFPLMPLKETAVQVKAQLGFQVQKTKTSVSRNGTPSWNEDLLFVAAEPCSDQLIFTLENRQPKGPVTIGMVRIALSATERRVDD RKVASRWFSLEDPRSEKAGYRGRVQLRLCFDGGYHVMDEAAHMSSDYRPTARQLWKQPVGTFELGIIGCKNLSPMKTVDGKGCTDAYCVAKYGPKWVRTR TVCDSLDPKWNEQYTWKVYDPCTVLTIGVFDSSGVYEIDGDKTATRPDFRMGKVRVRLSNLETGKVYRNRYPLILLTNNGVKKMGEIEVAVKFVRATPTL DFLHVYTQPLLPLMHHLKPLGVVQQELLRNSAVKIIATHLSRSEPSLRREVVSYMLDVDTHAFSMRKIRANWIRIINVIASVIDIVRWIDDTRVWKNPTS TVLVHALLIMLVWFPDLIVPTLAFYVFVIGAWNYRFRSRAPLPHFDPKLSLADSADRDELDEEFDPLPSSRPPEMVRTRYDKMRMLGARVQTVLGDFATQ GERLQALVTWRDPRATGIFVGLCFVVAMILYMVPSKMVAMASGFYVFRHPIFRDRMPSPALNFFRRLPSLSDRIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17980			C2 calcium/lipid-binding plant...		Potri.013G055500 [exp]	0	1
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Potri.004G223900 [exp]	3.16	0.9222
AT5G04500			glycosyltransferase family pro...		Potri.008G028900 [exp]	4.89	0.8723
AT3G52490			Double Clp-N motif-containing ...		Potri.006G204500 [exp]	6.00	0.9065
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	6.32	0.9026
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.017G017100 [exp]	7.07	0.8982
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	7.21	0.8704
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.010G205400 [exp]	8.48	0.8971
AT3G52490			Double Clp-N motif-containing ...		Potri.008G017600 [exp]	9.79	0.8850
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Potri.001G073600 [exp]	10.81	0.8826
AT5G44440			FAD-binding Berberine family p...		Potri.011G163232 [exp]	10.95	0.8393

Compare expression of checked genes

Potri.013G055500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.