Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03810 845 / 0 EDA30 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) AT3G30300 547 / 0 O-fucosyltransferase family protein (.1) AT1G04910 177 / 3e-48 O-fucosyltransferase family protein (.1) AT5G64600 175 / 2e-47 O-fucosyltransferase family protein (.1) AT1G22460 174 / 6e-47 O-fucosyltransferase family protein (.1) AT3G02250 170 / 1e-45 O-fucosyltransferase family protein (.1) AT5G15740 168 / 6e-45 RRT1 O-fucosyltransferase family protein (.1) AT3G54100 169 / 1e-44 O-fucosyltransferase family protein (.1) AT2G37980 169 / 2e-44 O-fucosyltransferase family protein (.1) AT1G11990 168 / 2e-44 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036600 [exp] 1090 / 0 AT3G03810 885 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Potri.017G101600 [exp] 588 / 0 AT3G30300 917 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113200 [exp] 588 / 0 AT3G30300 886 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G057300 [exp] 187 / 1e-51 AT1G04910 828 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G316800 [exp] 186 / 2e-51 AT1G04910 847 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 176 / 9e-48 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 176 / 2e-47 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 174 / 5e-47 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 174 / 9e-47 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013612 [exp] 852 / 0 AT3G03810 843 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10010654 [exp] 851 / 0 AT3G03810 840 / 0.0 embryo sac development arrest 30, O-fucosyltransferase family protein (.1) Lus10005094 [exp] 568 / 0 AT3G30300 887 / 0.0 O-fucosyltransferase family protein (.1) Lus10034356 [exp] 567 / 0 AT3G30300 895 / 0.0 O-fucosyltransferase family protein (.1) Lus10037830 [exp] 192 / 2e-53 AT1G04910 851 / 0.0 O-fucosyltransferase family protein (.1) Lus10032603 [exp] 182 / 4e-50 AT1G04910 845 / 0.0 O-fucosyltransferase family protein (.1) Lus10017105 [exp] 182 / 4e-49 AT1G04910 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10026624 [exp] 165 / 9e-44 AT1G14020 767 / 0.0 O-fucosyltransferase family protein (.1) Lus10037144 [exp] 164 / 1e-43 AT1G14020 779 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 164 / 3e-43 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.013G056200.3 pacid=42812066 polypeptide=Potri.013G056200.3.p locus=Potri.013G056200 ID=Potri.013G056200.3.v4.1 annot-version=v4.1 ATGAAGATGGTCTTTATATCCAAGATAAAATGGATTGCACTCTTTGTATTGATGCTATCGATGGTGTCTTTGGTGGTTCATCTTTCTATTACAAGGCTTT CAGGCGCTTATTCAATGCAATCTACTTTAATGCCCTTTAATGGATTTGATTTCACTGCTTCTATCTTTGCCCCACAGAGTGATAGATTTGTTAGAAATAT GAAGTTGTGGGGGCCTGTGATGTCATTGAAATCATTGCAGCCTTATGCCAATCCAAGAAGCAACTATCCTGTTCCAGCTGAAAGGAACAATGGTTACATT TATGCAAAAATTTTTGGTGGATTTGAGAAGATAAGATCCTCGATCTGTGATCTTGTCACCATATCCAGGCTTCTAAATGCTACTCTTGTCATTCCAGAGA TTCAAGAAAGTCTTCAATCAAAAGGCATTAGTTACAAATTCAAGAGTTTTTCATATCTCTTTGATGAAGATCAGTTCATAGCATCACTTAAAAATGATGT AAACATTGTGAAGAGCCTGCCTGAGAATTTGAAAGCAGCCAGGCGAAGGAATGAGGTCCGTACATATAAGCCCAAAAGATCTGCTTCTCCAAATTTCTAC GTCAAAGAAATTTTGCCTGTGTTAAAGAAATCCAAGGTTATTGGACTAGTTCTTCATGATGGAGGATGCCTGCAGTCAATTCTTCCACCGAGCATGTCCG AATTTCAGAGGCTTAGATGTCGGGTTGCATTCCATGCTCTAAAATTTCGCCGAGAAATTCAGATGGTTGGTCAGTTGATGGTTCAGAGGTTACGGGCATC TGGTCAACCTTTCCTTGCATTTCATCCTGGCTTGGTGAGAAACATTTTGGCATATCATGGTTGTGCAGAACTATTCCAGGATGTTCACGCTGAGCTTATA CAGTATCGAAGGGCACAGATGATTAAGCAAGGGATTCTTAATGGTGAGCTAGGTGTAGACTCACACATCCATAGAGACAATGGGTCATGCCCCCTCATGC CAGAAGAGGTTGGTCTTCTCCTTCAAACGATGGGCTATCCTAACAGAACAGTGATATATGTGGCTGGTTCTGAAACTTTCGGTGGTCAGCGTGTTTTGAT CCCTCTGCGTGCCATGTTCTCCAACACTGTGGATCGCACTCGGGTGTGCACTAAGCAAGAACTGTCTGATTTGGTTGGTCCTGAAACACCTCTTCCTCTG AATCCTTTTCAGCCACCTCCTACCAAAAGTGAGGAACAACTTAAAGAAGAGTGGAATATGGCAGGCCCTCGGCCTCGTCCCCTTCCTCCACCTCCTGACA GACCCATCTATCAACATGAAAAAGAAGGCTGGTATGGTTGGATCACTGAGTCTGACACAGAACCAGACCCTTCACCTGTAGATCTGAGGATGCAAGCACA CAGGTTACTCTGGGATGCTCTCGATTATATTGTCTCAGTGGAAGCAGATGCATTCTTTCCTGGTTTTCATAATGATGGTAGTGGATGGCCAGACTTCTCA AGCTTGGTCATGGGACAGCGGCTATACGAGAGTGCTTCTTCTATAACATATCGGCCAGACAGGAGAGTTCTTGCAGAACTTTTCAACATTACCCGTGACA ACATGTACTACCATCTCAACTATTCTTGGAAACTTTCAGTAAGGGAACATCTCAACAAATGCTTGAGTGAAGATGGCCTTATCAGGCAATCCCTTCTGTC AAAGCCAACCACATTCCTGTCTCACCCGCTTCCTGAATGCTCTTGTAGAATTCCTTCTGCAGAGGTTCCAAAACAGGTAAAAGGTAATGATGGACGATTA CTAGATGGAGGAGAGGACGAGTGCCCAACATGGATGAAGCATAGTCAGGAAGATGCTCACTTAGAGTCAGCAGTGGCAGAAGATGGTAGTAATGGTAATA ACGAGTTAGAATATGAAAATGATGGTGTTGAACAGCAAGAATCTGATGACAATGCAGTTAAAAGTAGACTTACTCAACTACCCGTGGATCAGGATGATGA ATGGGATCCTAATGACTAG
AA sequence Show only first row Show all	>Potri.013G056200.3 pacid=42812066 polypeptide=Potri.013G056200.3.p locus=Potri.013G056200 ID=Potri.013G056200.3.v4.1 annot-version=v4.1 MKMVFISKIKWIALFVLMLSMVSLVVHLSITRLSGAYSMQSTLMPFNGFDFTASIFAPQSDRFVRNMKLWGPVMSLKSLQPYANPRSNYPVPAERNNGYI YAKIFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLQSKGISYKFKSFSYLFDEDQFIASLKNDVNIVKSLPENLKAARRRNEVRTYKPKRSASPNFY VKEILPVLKKSKVIGLVLHDGGCLQSILPPSMSEFQRLRCRVAFHALKFRREIQMVGQLMVQRLRASGQPFLAFHPGLVRNILAYHGCAELFQDVHAELI QYRRAQMIKQGILNGELGVDSHIHRDNGSCPLMPEEVGLLLQTMGYPNRTVIYVAGSETFGGQRVLIPLRAMFSNTVDRTRVCTKQELSDLVGPETPLPL NPFQPPPTKSEEQLKEEWNMAGPRPRPLPPPPDRPIYQHEKEGWYGWITESDTEPDPSPVDLRMQAHRLLWDALDYIVSVEADAFFPGFHNDGSGWPDFS SLVMGQRLYESASSITYRPDRRVLAELFNITRDNMYYHLNYSWKLSVREHLNKCLSEDGLIRQSLLSKPTTFLSHPLPECSCRIPSAEVPKQVKGNDGRL LDGGEDECPTWMKHSQEDAHLESAVAEDGSNGNNELEYENDGVEQQESDDNAVKSRLTQLPVDQDDEWDPND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03810		EDA30	embryo sac development arrest ...		Potri.013G056200 [exp]	0	1
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	5.83	0.7594
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	11.40	0.7047
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Potri.001G185050 [exp]	14.96	0.6971
AT3G20720			unknown protein		Potri.011G132800 [exp]	16.97	0.6988
AT5G55060			unknown protein		Potri.011G089300 [exp]	20.49	0.6796
AT2G01270		ATQSOX2	quiescin-sulfhydryl oxidase 2 ...		Potri.010G115700 [exp]	22.36	0.6616
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	23.55	0.6780
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	23.66	0.6150
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	23.81	0.6918	CHR923
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	26.21	0.7100

Compare expression of checked genes

Potri.013G056200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.