Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19820 1644 / 0 EMB2734 embryo defective 2734, ARM repeat superfamily protein (.1) AT4G27640 265 / 1e-73 ARM repeat superfamily protein (.1) AT1G26170 56 / 2e-07 ARM repeat superfamily protein (.1) AT2G16950 52 / 2e-06 ATTRN1 transportin 1 (.1.2) AT2G16960 48 / 4e-05 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220100 [exp] 1675 / 0 AT5G19820 1754 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.001G004800 [exp] 1656 / 0 AT5G19820 1776 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.017G137400 [exp] 671 / 0 AT5G19820 682 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G082601 [exp] 562 / 0 AT5G19820 554 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.007G084901 [exp] 551 / 0 AT5G19820 509 / 1e-167 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.008G085800 [exp] 280 / 1e-78 AT4G27640 1605 / 0.0 ARM repeat superfamily protein (.1) Potri.010G169800 [exp] 273 / 2e-76 AT4G27640 1584 / 0.0 ARM repeat superfamily protein (.1) Potri.007G084501 [exp] 197 / 2e-57 AT5G19820 184 / 1e-53 embryo defective 2734, ARM repeat superfamily protein (.1) Potri.004G122133 [exp] 149 / 2e-40 AT5G19820 140 / 4e-38 embryo defective 2734, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013763 [exp] 1188 / 0 AT5G19820 1295 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10039172 [exp] 1142 / 0 AT5G19820 1229 / 0.0 embryo defective 2734, ARM repeat superfamily protein (.1) Lus10034202 [exp] 277 / 2e-77 AT4G27640 1652 / 0.0 ARM repeat superfamily protein (.1) Lus10029067 [exp] 272 / 7e-76 AT4G27640 1646 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02985 [poplar] [flax] HEAT HEAT repeat CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF13646 [poplar] [flax] HEAT_2 HEAT repeats
Representative CDS sequence Show only first row Show all	>Potri.013G056600.2 pacid=42811669 polypeptide=Potri.013G056600.2.p locus=Potri.013G056600 ID=Potri.013G056600.2.v4.1 annot-version=v4.1 ATGGCGACCGATCCAACTCAGTTGCACCAACTCAGTCTCCTTCTCGGACCTGATCCCACTCTCTTCGAAACCTTAATAACTCACCTTATGTCCTCTTCTA ACGAACAACGATCCACAGCGGAGTTCCTCTTCAATCTCTGCAAACAAACTCACCCCGACTCTCTCCTGCTCCGGCTCACTCAACTCCTCTCCTCCTCTTC CCTCCCCGAAATCCGTGCCATGTCCGCCGTCCTCCTCCGGAAACATCTCACCTCTGCCACCGAAGACTCCTTCCTCTACCCTCAACTTACTGAGTCAACT CGGTCCATCATCAAAAACTCTCTCCTCTCCTCTCTCCAACATGAAACCACAAAATCCATCACCAGAAAGATAAACGACACAATCTCGGAACTCGCCGCCT CGGTTCTTCCCGATGGGGGCTGGCAGGAGTTGTTGCCGTTCATGTTCCAGTGTGTTACCGCTCAAAGCAATCACAATCTCCAAGAATCAGCGCTTTTAAT CTTCGCCCGATTGGCTCAATACATCGGCGAAGCCCTAATTCCACACTTAGCTACACTTCACGGAGTGTTTTTAAATTGTTTGCATAATTCAACGAGCGGT GAAGTTAGAATCGCGGCTTTGAACGCGACAATCAATTTTATTCAGTGTTTAACAAACAATTCTGATCGTGATATGTTTCAAGATTTGTTGCCGTTGATGA TGAGGACTTTGACCGAGGCGTTGAATGGAAATCAAGAGGCAACAGCACAAGAAGCGCTCGAATTGTTGATTGAATTGGCGGGAGGGGAACCACGGTTTTT GAGAAAGCAAATAGTGGAGGTTGTAGGGTCCATGTTGCAAATTGCAGAGGCGGGGAGCTTAGAGGAGGGGACCAGGCATTTAGCTATTGAATTTGTGATT ACTTTGGCGGAAGCAAGAGATCGAGCTCCGGGGATGATGAGGAAGTTGCCGCAATTTGTGCATAGGCTGTTTATGGTTTTGATGGGGATGTTGTTGGATA TTGATGATGATCCACAATGGCATGGTGCGGAGACTGAAGATGAAGATTCGGGAGAGACCAGTAATTATGGGTTTGGGCAAGAGTGTTTGGATAGGTTGGC TATTGCCCTTGGTGGCAATACAGTCGTTCCTGTTGCTTCAGAGGTTTTCCCAGCATTTTTTACTGCTCCGGAGTGGCAGAAGCCTCATGCTGCGCTTATT GCTCTAGCACAAATTGCTGAGGGTTGCTCAAAGGTGATGATAAAGAACCTGGACCACGTAGTCTCTATGGTTTTGAATTCATTTCAACATCCCCACCCCC GTGTGAGATGGGCTGCTATAAATGCAATTGGACAATTGTCAACAGACTTGGGCCCAGATTTGCAAATGAAGTATCACCAGCTAGTGCTGCCTGCTTTGGC TGGAGCCATGGATGATGTTCAAAATCCTCGAGTCCAGGCCCATGCCGCTTCTGCAGTGCTTAATTTCAGTGAGAATTGCATGCCAGATATCCTGACACCA TACTTGGATGGGGTTGTTAGCAAACTGCTCGTACTTCTTCAGAATGGGAAGCAGATGGTTAAAGAAGGAGCCCTGACAGCTTTAGCGTCTGTCGCTGATT CATCACAGGAGCACTTCCAGAAATACTATGATGCTGTAATGCCTTACTTAAAAGCTATATTGATCAATGCAAATGACAAGTCTAATCGCATGCTCCGTGC AAAATCTATGGAGTGCATTAGTCTGGTTGGGATGGCTGTGGGAAAGGATAAATTTAGAGACGATGCTAAGCAGGTTATGGATGTCCTGATGTCTCTGCAA GGATCTCAAATGGAGGCAGATGACCCTACAACAAGCTACATGTTACAAGCCTGGGCCAGACTTTGCAAGTGCCTTGGACAGGATTTTCTTCCTTACATGA GTGTTGTCATGCCTCCTTTGCTTCAGTCTGCCCAGCTTAAGCCTGATGTTACCATTACATCTGCAGATTCAGATGCTGATATTGATGATGTCGACGATGG CAGCATTGAAACAATCACTCTTGGGGATAAAAGAATAGGGATCAGAACAAGTGTCCTGGAGGAAAAGGCTACAGCTTGTAACATGCTTTGCTGCTATGCT GATGAGTTGAAGGAAGGATTTTTCCCATGGATTGATCAGGTTGCAGCTACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTGAGGAAGGCAG CTGTGTCAGCTATGCCGGAGCTGTTAGGTTCCGCTAAATTAGCTGTAGAGAAGGATCAATCTCAAGGGCATAATGAGTCTTATATAAAGCAATTGTCAGA CTATATAGTTCCAGCTTTGGTGGAGGCGTTACACAAGGAGCCCGAGGTAGAAATTTGTGTGAGCATGTTGGATTCGTTGACTGAATGCATACAGGTATCT GGACCTCTTTTAGATGAAAGCCAAGTAAGGTCCATTGTGGAGGAGATAAAGCAGGTCATCACAGCCAGCTCAGTTAGAAAACAGGAACGGGTGGAGAGGA TCAAAGCAGAGGACTTTGATGCCGAAGAAGGAGAGCTGCTTGAAGAAGAAAATGAGCTAGAAGAAGAACTTTTTGATCGAGTTGGTGATTGCATGGGCAC ATTGATCAAAACCTTCAAGGCCTCTTTCCTGCCTTTCTTTGATGAGCTTTCGCCTTACATAACACCTATGTCGGGCAAGGATAAAACAGCAGAAGAGAGG AGAATTGCCATTTGTATATTTGATGATGTTGTGGAGCATTTTAAGGAAGCTGCTCTTAAATATTATGGTACTTATGTCCCTTTCTTACTAGAAGCCTGCA ATGATGAAAACCCAGATGTTCGTCAGGCAGCTGTTTATGGGATTGGTATTTGCGCAGAGCTTGGTGGATCTGTGTTTAAACCACTTGTTGGAGAGGCTCT TTCCCAGTTGAATGCTGTAATAAGTGATCCTAATGCACATCATTCAGACAATACAATGGCATATGACAATGCTGTTTCAGCTCTTGGAAAAATATGCGAG TTTCATCGGGATAGCATAGATGCAGCACGGATAGTTCCAGCTTGGTTGAGCTGCTTGCCAATAAAAAACGATTTAATTGAAGCCAAGGTTGTGCATGATC AGCTTTGCTCAATGGTAGAAAGGTCCGATAGAGAACTTTTTGGGTCAAACAATCAATACCTTCCCAAAATAGTCCGAGTTTTTGCTGAGGTCATATGTGC AGGAAAAGAGTTGGCAACAGAGCAAACTGGTAGTCGAATGATTAATCTGTTGAGACAACTTCAGCAAATGCTACCACCTGCTACCCTAGCTTCAACTTGG TCGTCCTTGGAACCACAGCAGCAACTTGCCTTGCAATCTATTCTTTCTTCTTAG
AA sequence Show only first row Show all	>Potri.013G056600.2 pacid=42811669 polypeptide=Potri.013G056600.2.p locus=Potri.013G056600 ID=Potri.013G056600.2.v4.1 annot-version=v4.1 MATDPTQLHQLSLLLGPDPTLFETLITHLMSSSNEQRSTAEFLFNLCKQTHPDSLLLRLTQLLSSSSLPEIRAMSAVLLRKHLTSATEDSFLYPQLTEST RSIIKNSLLSSLQHETTKSITRKINDTISELAASVLPDGGWQELLPFMFQCVTAQSNHNLQESALLIFARLAQYIGEALIPHLATLHGVFLNCLHNSTSG EVRIAALNATINFIQCLTNNSDRDMFQDLLPLMMRTLTEALNGNQEATAQEALELLIELAGGEPRFLRKQIVEVVGSMLQIAEAGSLEEGTRHLAIEFVI TLAEARDRAPGMMRKLPQFVHRLFMVLMGMLLDIDDDPQWHGAETEDEDSGETSNYGFGQECLDRLAIALGGNTVVPVASEVFPAFFTAPEWQKPHAALI ALAQIAEGCSKVMIKNLDHVVSMVLNSFQHPHPRVRWAAINAIGQLSTDLGPDLQMKYHQLVLPALAGAMDDVQNPRVQAHAASAVLNFSENCMPDILTP YLDGVVSKLLVLLQNGKQMVKEGALTALASVADSSQEHFQKYYDAVMPYLKAILINANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMDVLMSLQ GSQMEADDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDADIDDVDDGSIETITLGDKRIGIRTSVLEEKATACNMLCCYA DELKEGFFPWIDQVAATLVPLLKFYFHEEVRKAAVSAMPELLGSAKLAVEKDQSQGHNESYIKQLSDYIVPALVEALHKEPEVEICVSMLDSLTECIQVS GPLLDESQVRSIVEEIKQVITASSVRKQERVERIKAEDFDAEEGELLEEENELEEELFDRVGDCMGTLIKTFKASFLPFFDELSPYITPMSGKDKTAEER RIAICIFDDVVEHFKEAALKYYGTYVPFLLEACNDENPDVRQAAVYGIGICAELGGSVFKPLVGEALSQLNAVISDPNAHHSDNTMAYDNAVSALGKICE FHRDSIDAARIVPAWLSCLPIKNDLIEAKVVHDQLCSMVERSDRELFGSNNQYLPKIVRVFAEVICAGKELATEQTGSRMINLLRQLQQMLPPATLASTW SSLEPQQQLALQSILSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	0	1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	2.44	0.8939
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Potri.009G146400 [exp]	3.16	0.9031
AT5G13480		FY	Transducin/WD40 repeat-like su...		Potri.001G026800 [exp]	3.46	0.8912
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	8.71	0.8589
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	8.94	0.8878
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	9.00	0.8756
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.010G212100 [exp]	9.48	0.8624
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	10.09	0.8844
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	12.96	0.8826
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	14.28	0.8620	SDG907,SUVH3.1

Compare expression of checked genes

Potri.013G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.