Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TUA6,TUA1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19780 810 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 810 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 792 / 0 TUA1 alpha-1 tubulin (.1) AT1G50010 776 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 776 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 775 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT1G75780 357 / 1e-119 TUB1 tubulin beta-1 chain (.1) AT5G62690 355 / 7e-119 TUB2 tubulin beta chain 2 (.1) AT5G62700 355 / 7e-119 atgcp3, TUB3 tubulin beta chain 3 (.1) AT4G20890 352 / 5e-118 TUB9 tubulin beta-9 chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036000 [exp] 822 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.003G220300 [exp] 805 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 799 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.002G111900 [exp] 783 / 0 AT1G50010 858 / 0.0 tubulin alpha-2 chain (.1) Potri.009G085100 [exp] 783 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.001G289500 [exp] 781 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.017G081000 [exp] 776 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.006G095000 [exp] 358 / 2e-120 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.009G040200 [exp] 354 / 8e-119 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005705 [exp] 812 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 812 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10013765 [exp] 803 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 803 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10035422 [exp] 781 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10031032 [exp] 781 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10021094 [exp] 355 / 6e-119 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10026813 [exp] 354 / 2e-118 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 353 / 2e-118 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10040712 [exp] 352 / 5e-118 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G056800.1 pacid=42811491 polypeptide=Potri.013G056800.1.p locus=Potri.013G056800 ID=Potri.013G056800.1.v4.1 annot-version=v4.1 ATGAGGGAGATAATAAGCATACATATTGGACAGGCAGGAATTCAGGTCGGGAATTCTTGTTGGGAACTTTATTGTCTTGAACATGGAATACAGCCAGATG GAACGATGCCTAGTGACACCTCAGTTGGAGTGGAACATGATTCTTTCAATACCTTCTTCAGCGAAACTGGTTCAGGCAAGCATGTGCCAAGAGCTATATT TGTTGATCTTGAACCCTCTGTCATTGATGAAGTCAGAAGTGGGACTTACAGACAACTTTTTCACCCGGAGCAACTTATTTCTGGCAAGGAAGATGCTGCT AATAACTTTGCCAGGGGACATTATACAGTGGGAAGGGAAATTGTCGAACTATGCCTTGACCGCGTGAGGAAATTGGCAGACAATTGCACTGGCTTGCAAG GCTTTTTGGTATTTAATGCTGTTGGCGGTGGCACTGGTTCTGGTTTGGGCTCACTACTTTTGGAACGCTTGTCTGTGGATTATGGAAAGAAGTCGAAACT TGGCTTCACCATTTTTCCTTCTCCTCAGGTTTCTACTGCCGTCGTGGAACCTTACAATAGTGTGCTCTCCACTCACTCTCTCCTTGAACACACAGACGTT GCTGTGCTTTTGGACAATGAAGCTATCTATGACATCTGCAGGAGATCTTTAGACATTGAAAGACCAACATACAACAATTTGAACCGTTTGATATCCCAAA TTATCTCATCTTTAACCACTTCCTTGAGGTTTGATGGGGCCATTAATGTGGACATCACAGAGTTTCAAACTAATCTTGTTCCATATCCCCGAATCCATTT CATGCTTTCATCTTATGCCCCAGTGATCTCAGCCGCAAAGGCTTACCATGAGCAGCTTTCAGTTCCTGAGATCACAAGTGCTGTGTTTGAGCCCTCAAGT ATGATGGCCAAATGTGATCCAAGGCATGGAAAATACATGGCTTGCTGTCTCATGTATCGTGGAGATGTTGTACCAAAGGATGTTAATTCTGCTGTTGCCA CCATTAAGACAAAGAGGACAGTTCAATTTGTAGACTGGTGCCCAACTGGTTTCAAGTGCGGTATCAACTACCAACCACCAACAGTGGTACCTGGAGGTGA TCTTGCTAAAGTGCAGCGTGCAGTTTGCATGATAAGCAACAACACAGCAGTAGCTGAGGTCTTCTCCAGAATTGATTACAAGTTTGATCTCATGTATTCC AAGCGAGCATTTGTCCACTGGTACGTGGGCGAAGGCATGGAGGAAGGTGAATTCTCAGAAGCTCGTGAAGATCTTGCTGCTCTTGAGAAAGACTATGAGG AAGTCGGAGCAGAAGGTGGTGATGAGGAAGGTGAGGAGGAAGATTACTAG
AA sequence Show only first row Show all	>Potri.013G056800.1 pacid=42811491 polypeptide=Potri.013G056800.1.p locus=Potri.013G056800 ID=Potri.013G056800.1.v4.1 annot-version=v4.1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDTSVGVEHDSFNTFFSETGSGKHVPRAIFVDLEPSVIDEVRSGTYRQLFHPEQLISGKEDAA NNFARGHYTVGREIVELCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIFPSPQVSTAVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYNNLNRLISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITSAVFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDYKFDLMYS KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDEEGEEEDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.013G056800 [exp]	0	1	TUA6,TUA1.2
AT1G15860			Domain of unknown function (DU...		Potri.001G047900 [exp]	18.57	0.7106
AT5G11500			unknown protein		Potri.018G037800 [exp]	40.00	0.6517
AT1G76860			Small nuclear ribonucleoprotei...		Potri.005G191600 [exp]	40.47	0.6945
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	51.30	0.6536
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	80.21	0.6715
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	83.66	0.6657
AT2G36300			Integral membrane Yip1 family ...		Potri.009G152600 [exp]	114.23	0.6428
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	118.25	0.6545	RAB11.4
AT5G46020			unknown protein		Potri.011G060800 [exp]	216.69	0.6402

Compare expression of checked genes

Potri.013G056800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.