Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18130 138 / 5e-39 unknown protein AT3G03870 122 / 4e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035600 [exp] 481 / 2e-173 AT5G18130 159 / 8e-47 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020284 [exp] 178 / 1e-54 AT5G18130 162 / 9e-49 unknown protein Lus10005702 [exp] 175 / 2e-53 AT5G18130 157 / 5e-47 unknown protein Lus10003531 [exp] 45 / 7e-05 AT4G13530 186 / 7e-55 unknown protein Lus10041074 [exp] 44 / 0.0001 AT4G13530 170 / 2e-50 unknown protein Lus10030342 [exp] 42 / 0.0004 AT4G13530 176 / 1e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G057200.5 pacid=42810806 polypeptide=Potri.013G057200.5.p locus=Potri.013G057200 ID=Potri.013G057200.5.v4.1 annot-version=v4.1 ATGGATCTTGAAGAGTGGGAGCTACTACCCCATGATGGGTTCATTGATTACCATGAAGATGGTGAAAAGAAGACTTTTGGGGCAAGCAAACGTAGTAATC CTCGTCGTCCCAAGAGCATGGTCAACATGAACTACTTCATGTGCCCATCTTCACCACCGAAAGATTCTAGGCTAGTTCCTAATCAACTTGTCCCGGTTCC AATTCAGTTGGAGCCAACAACAACAGCTGGCAAGGATGTCCCAGAAGGTCATGTGATCTCAAAAAAAGAAGTGATCTCCGTGGTACCTATTGACCTAGGT GCTGCGGTTCCTTCTGTGATCATGCCAGAAGTCAAAGAAGCTGATCAAGACTCAGTTTCTCAAGTTTTCTTCAAGAAAATGAAGGAAAACGAATTTGTCG ACATGAAATTGGACTCTCCAAAGTCCTCTAGCAGTAAGGGTGGCTTTGTGCCTCCTCAAATTGATGCTGGCGCTACTTTTAACTTTGAAGACCAAAGTGA TCATCAGGGCTATAAAGGTGATCGGGAATTGGATGCCACCAAGATTAGTTCTCCAAGGATCAAGAGCACTGGAAAAGAAAGTGGTACAAAAGGGGAGGTG AGATGGGAGGAGAATGGTGGTGGCTTGAATTTATGGAAGTTGAGCTTAACTGGGATTGGTGCTATTTGCTCTTTTGGTGTTGCTGCTGCTACCATCTGTA TTTTCATCTTTGGAAGTCACCAGAGAAACAAGCAGCAACAACAGAACCAAAAGCCGAGCTTCCAGATTTACACTGATGACAAGAGGATTGAGCAAGTGGT TCACCATGCAACAAAATTGAATGGAGCAATTTCAGTCGCAAGAGGAGTACCTGTTGCTAGAGCTCACATTACCTATGGTGGTTACTATGGTGGTATCTGA
AA sequence Show only first row Show all	>Potri.013G057200.5 pacid=42810806 polypeptide=Potri.013G057200.5.p locus=Potri.013G057200 ID=Potri.013G057200.5.v4.1 annot-version=v4.1 MDLEEWELLPHDGFIDYHEDGEKKTFGASKRSNPRRPKSMVNMNYFMCPSSPPKDSRLVPNQLVPVPIQLEPTTTAGKDVPEGHVISKKEVISVVPIDLG AAVPSVIMPEVKEADQDSVSQVFFKKMKENEFVDMKLDSPKSSSSKGGFVPPQIDAGATFNFEDQSDHQGYKGDRELDATKISSPRIKSTGKESGTKGEV RWEENGGGLNLWKLSLTGIGAICSFGVAAATICIFIFGSHQRNKQQQQNQKPSFQIYTDDKRIEQVVHHATKLNGAISVARGVPVARAHITYGGYYGGI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18130			unknown protein		Potri.013G057200 [exp]	0	1
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	1.00	0.9542
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	2.82	0.9382
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	3.46	0.9407
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	3.74	0.9247	Pt-RFS.3
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	4.47	0.9376
AT4G27290			S-locus lectin protein kinase ...		Potri.011G035913 [exp]	7.07	0.9182
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Potri.008G182000 [exp]	7.93	0.9199
AT4G01970		RS4, ATSTS	raffinose synthase 4, stachyos...		Potri.014G118400 [exp]	8.06	0.9072
AT2G28780			unknown protein		Potri.006G082000 [exp]	8.12	0.8773
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Potri.010G011900 [exp]	8.30	0.8893	Pt-MFP2.2

Compare expression of checked genes

Potri.013G057200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.