Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03890 430 / 6e-153 FMN binding (.1.2) AT3G21140 94 / 7e-22 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT1G51560 89 / 7e-20 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G21200 58 / 1e-09 PGR7 proton gradient regulation 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035200 [exp] 489 / 3e-176 AT3G03890 452 / 4e-161 FMN binding (.1.2) Potri.008G006400 [exp] 82 / 2e-17 AT1G51560 533 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G252300 [exp] 80 / 5e-17 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.010G250200 [exp] 62 / 6e-11 AT3G21200 419 / 3e-148 proton gradient regulation 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010649 [exp] 429 / 2e-152 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10013617 [exp] 375 / 2e-127 AT3G03890 363 / 6e-122 FMN binding (.1.2) Lus10034828 [exp] 87 / 4e-19 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10033378 [exp] 84 / 5e-18 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10039466 [exp] 53 / 4e-08 AT2G04690 254 / 3e-86 Pyridoxamine 5'-phosphate oxidase family protein (.1.2) Lus10035751 [exp] 54 / 5e-08 AT3G21200 362 / 6e-126 proton gradient regulation 7 (.1) Lus10037330 [exp] 52 / 1e-07 AT3G21200 368 / 6e-128 proton gradient regulation 7 (.1) Lus10014952 [exp] 41 / 0.0007 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10615 [poplar] [flax] DUF2470 Protein of unknown function (DUF2470) CL0336 [poplar] [flax] FMN-binding PF13883 [poplar] [flax] Pyrid_oxidase_2 Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence Show only first row Show all	>Potri.013G057700.2 pacid=42811664 polypeptide=Potri.013G057700.2.p locus=Potri.013G057700 ID=Potri.013G057700.2.v4.1 annot-version=v4.1 ATGGCTTCTGTTGCTCAGTCTTCCACTCAGGCTGTGTCAACTGGGGATGTTAACTCTGATGCCAATGTGTTCCAGTTGATCCAAACTCACCAGGAAAAGG CAGCTCGGCTTCCTCCGGTTGAGGAAATTAGAACCGTGCTTGACCAGAGCACGCACGGCATGCTTTCAACTTTTTCTCAGAAGCATGGGGGTTATCCGTC AGGGTCAGTGGTTGATTTTGCATGCGATGCTGATGGATCTCCAATAGTAGCAGTCAGCAGCTGGGCAGTACATGCTAAGGACCTAATAGCCAATCCCAAA TGCTCATTGCTTGTTGCTAAAGATCCTGAAGATAGGACTGATTTAGTAATCACCCTGCATGGTGATTCCATTCCTGTTTCTGAGAAAGATGTAACTGCTG TTCGAACAGCATATCTGGCAAAGCATCCTGGTGCATTCAGGGTTGACTTTGGTGATTTCCAATTTATGCGCATTGAACCAAAAGCTGTGCAATACGTGTC AGGAGTTGCAACTACTTTGTTTGGATCTGGCGAATTCAGCAAAGAAGAGTACCAGACTGCTAAAGTTGATCCAATTGCTCAATTTTCTAAACCTGTTGCG TCTCACATGAACAGAGATCATGCTGAAGATACAAGACTCATAGTGCAACACTCAACTTCAATTCCGGTGGACTCTGCTTATATGCTGGATGTGGACAGTC TTGGATTCAATGTTAAGGCTGTTTATCAAGGAAATACTTACAAGCTTCGAATTCCTTTCCCTAGACGTGCAGAAGAGAGAAAGGATGTAAAGACTCTGGT GGTAGAGATGCTTCAAGCTGCGAAGTCTCAAATTAAATGA
AA sequence Show only first row Show all	>Potri.013G057700.2 pacid=42811664 polypeptide=Potri.013G057700.2.p locus=Potri.013G057700 ID=Potri.013G057700.2.v4.1 annot-version=v4.1 MASVAQSSTQAVSTGDVNSDANVFQLIQTHQEKAARLPPVEEIRTVLDQSTHGMLSTFSQKHGGYPSGSVVDFACDADGSPIVAVSSWAVHAKDLIANPK CSLLVAKDPEDRTDLVITLHGDSIPVSEKDVTAVRTAYLAKHPGAFRVDFGDFQFMRIEPKAVQYVSGVATTLFGSGEFSKEEYQTAKVDPIAQFSKPVA SHMNRDHAEDTRLIVQHSTSIPVDSAYMLDVDSLGFNVKAVYQGNTYKLRIPFPRRAEERKDVKTLVVEMLQAAKSQIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03890			FMN binding (.1.2)		Potri.013G057700 [exp]	0	1
AT1G02960			unknown protein		Potri.002G208058 [exp]	3.31	0.8172
AT1G16570			UDP-Glycosyltransferase superf...		Potri.001G394300 [exp]	4.00	0.8074
AT1G73320			S-adenosyl-L-methionine-depend...		Potri.017G153900 [exp]	7.07	0.8078
AT1G53760			unknown protein		Potri.001G161800 [exp]	8.00	0.7732
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Potri.005G087100 [exp]	10.95	0.8055
AT5G18420			unknown protein		Potri.017G122600 [exp]	11.22	0.7701
AT1G43190		PTB3	polypyrimidine tract-binding p...		Potri.005G194700 [exp]	14.79	0.7167
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Potri.013G095300 [exp]	15.49	0.7734
AT1G12230			Aldolase superfamily protein (...		Potri.001G120400 [exp]	15.71	0.7738
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Potri.019G072700 [exp]	15.74	0.7840	Pt-PFI.1,TFCFE

Compare expression of checked genes

Potri.013G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.