Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18140 264 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 77 / 1e-15 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 77 / 2e-15 DNAJ heat shock family protein (.1) AT3G17830 74 / 3e-14 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G80030 73 / 4e-14 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT1G61770 66 / 3e-12 Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 64 / 1e-11 Chaperone DnaJ-domain superfamily protein (.1.2) AT5G05750 63 / 4e-11 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G57340 62 / 1e-10 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) AT2G41000 59 / 3e-10 Chaperone DnaJ-domain superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G035100 [exp] 420 / 1e-147 AT5G18140 225 / 3e-71 Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 76 / 4e-15 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.005G073900 [exp] 75 / 8e-15 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 73 / 5e-14 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.015G035300 [exp] 69 / 9e-13 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.004G022600 [exp] 66 / 4e-12 AT1G61770 406 / 9e-144 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 65 / 8e-12 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.006G153700 [exp] 64 / 2e-11 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Potri.009G065500 [exp] 64 / 4e-11 AT5G48030 504 / 1e-177 gametophytic factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020286 [exp] 254 / 5e-83 AT5G18140 265 / 3e-87 Chaperone DnaJ-domain superfamily protein (.1) Lus10023148 [exp] 77 / 3e-15 AT2G22360 675 / 0.0 DNAJ heat shock family protein (.1) Lus10000631 [exp] 76 / 6e-15 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1) Lus10005699 [exp] 70 / 2e-14 AT5G18140 75 / 1e-16 Chaperone DnaJ-domain superfamily protein (.1) Lus10023122 [exp] 73 / 6e-14 AT1G80030 636 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10011484 [exp] 72 / 2e-13 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10020949 [exp] 69 / 9e-13 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10002355 [exp] 66 / 2e-12 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10006760 [exp] 66 / 4e-12 AT1G61770 409 / 5e-145 Chaperone DnaJ-domain superfamily protein (.1) Lus10037502 [exp] 66 / 6e-12 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.013G058100.1 pacid=42811639 polypeptide=Potri.013G058100.1.p locus=Potri.013G058100 ID=Potri.013G058100.1.v4.1 annot-version=v4.1 ATGCAAGCGCGCCTCCTCCTGGTGGGACCTATCCCCACCACAATCGACGCCTCTGCTTCATTCTCCTCCTCCAGCTCCATCATCACCGGTGGCCGCAATT CCCTGATCGGTAGCTGGATCTACCATCCTAACCTTGACAATAAATCCCGCCATCGCAAAAACAACAAATGGGGCTCGACAGTGGTAGTTGCATCATCATC GTCATCATGGGCAGCAATCAACGGCGGCGAGCAAGACCATTACGCGGTGCTGGGACTCGAGCGGACCGCCACTTCAGCCGATATTAAAAAAGCTTATCGC TTTCTTGCTCGAAAGTATCATCCTGATGTCAGCAAGCATTCACAAGCTGGTGAGCTGTTCAAGAGCATTCGGCATGCATACGAAATACTCTCTAATGAAG TGACAAGGACTCAGTATGATCGAGTACTTAGGTTTCAAGAAGAAACTGGCAGGTCATATAGCAAAAACCAATACTATGCACCTGAAGTTGAAAACTGGGT AAGGATATACAGGTGGGCTGAAATGAAGCGGAAAACGAGGAGCGAGAGATATAGGGAGCATTATAACGTGAGTGAGGATCCTTCCTTCTACAGTGAGACA GAAGAGGAAGCCGAAGAAGGAAGCCTAGATCAGGAAAGAGGCCCGTTTAGCGAAGTGCTAAGATCTGCATTTATCTCTCTCTTCTTACTGCATACTTTTG GATCTCTATTATCTCTCGCCTTCAGCAGTCTCATGGCTTTGTTCGACAGACAATTGGATGCTGGGTATAAGATTGGTTATTTGATTGCATGGATTTTGGG TGGGAGAGGTGGGATTTCGCTTGTTCTGTGTCTCCAATTTGCTAGCTGGGCATGTGGAAAGAGGAGCAGCAGCATGGTTGCTCTGGTAGTGGTAGCCATG TGGGTTGGTTCAAATCTTGCTAGGTTTGCTCCACTCCCGCAAGGTGCTCTTGTTACACTTCTGTACATGTCTATTAAGCTGCAAGCGGACCTAAATTGA
AA sequence Show only first row Show all	>Potri.013G058100.1 pacid=42811639 polypeptide=Potri.013G058100.1.p locus=Potri.013G058100 ID=Potri.013G058100.1.v4.1 annot-version=v4.1 MQARLLLVGPIPTTIDASASFSSSSSIITGGRNSLIGSWIYHPNLDNKSRHRKNNKWGSTVVVASSSSSWAAINGGEQDHYAVLGLERTATSADIKKAYR FLARKYHPDVSKHSQAGELFKSIRHAYEILSNEVTRTQYDRVLRFQEETGRSYSKNQYYAPEVENWVRIYRWAEMKRKTRSERYREHYNVSEDPSFYSET EEEAEEGSLDQERGPFSEVLRSAFISLFLLHTFGSLLSLAFSSLMALFDRQLDAGYKIGYLIAWILGGRGGISLVLCLQFASWACGKRSSSMVALVVVAM WVGSNLARFAPLPQGALVTLLYMSIKLQADLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	0	1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	1.73	0.8691	Pt-SPP1.1
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Potri.003G019500 [exp]	2.44	0.8631
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Potri.006G133500 [exp]	3.16	0.8339
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.002G107700 [exp]	5.09	0.8085
					Potri.009G125700 [exp]	5.29	0.8389
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G132300 [exp]	7.34	0.7696
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.006G060200 [exp]	11.57	0.7628
AT2G02410			unknown protein		Potri.003G046600 [exp]	12.84	0.7848
AT2G42760			unknown protein		Potri.006G129800 [exp]	12.96	0.7910
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	13.63	0.7869

Compare expression of checked genes

Potri.013G058100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.