Plant FIBer expression Database

Potri.013G058400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03920 181 / 4e-58 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
AT5G18180 171 / 3e-54 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G034900
[exp]
201 / 5e-66 AT3G03920 180 / 1e-57 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020289
[exp]
187 / 1e-60 AT3G03920 196 / 7e-64 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0575 EFTPs PF04410 Gar1 Gar1/Naf1 RNA binding region
Representative CDS sequence
>Potri.013G058400.1 pacid=42812665 polypeptide=Potri.013G058400.1.p locus=Potri.013G058400 ID=Potri.013G058400.1.v4.1 annot-version=v4.1
ATGAGGCCACCAAGAGGCGGCGGATTTAGGGGAGGTAGAGACGGCGGGTTTAGGGGAGGTAGAGACGGCGGGTTTAGGGGAGGTAGAGACGGCGGTTTTA
GGGGAGGTAGAGACGGCGGTTTCAGGGGCGGACGTGGCGGACGTGGCGGCGGGTTTCGTGATGAAGGCCCTCCTTCTGAAGTAATAGAGGTTTCATCGTT
TCTTCATGCATGTGAAGGAGATGCAGTGACAAAACTAACCAATGAGAAAATTCCATACTTCAATGCTCCGATCTTTTTGCAGAATAAGACCCAGATAGGG
AAAGTTGATGAAATCTTCGGTCCCATTAATGAATCTTATTTTTCTATCAAAATGATGGAAGGAATTGTGGCAACTTCGTATGCTCCAGGGGATAAGTTTT
ATATTGATCCGAGTAAACTCTTGCCTCTTGCAAGATTTCTTACACAACCAAAGGGACAAGCACAAGGTGGCAGAGGTGGTGGTCGTGGAGGAAGAGGCAG
AGGCGGTTTTGGTGGTGGCAGAGGTGATTTCCGTGGGAGAGGCAGAGGCAGAGGTCCACCAAGAGGTGGTGGCCGTGGACGTGGTGGTGGCTTTAGGGGA
AGAGGGAGGGGATAA
AA sequence
>Potri.013G058400.1 pacid=42812665 polypeptide=Potri.013G058400.1.p locus=Potri.013G058400 ID=Potri.013G058400.1.v4.1 annot-version=v4.1
MRPPRGGGFRGGRDGGFRGGRDGGFRGGRDGGFRGGRDGGFRGGRGGRGGGFRDEGPPSEVIEVSSFLHACEGDAVTKLTNEKIPYFNAPIFLQNKTQIG
KVDEIFGPINESYFSIKMMEGIVATSYAPGDKFYIDPSKLLPLARFLTQPKGQAQGGRGGGRGGRGRGGFGGGRGDFRGRGRGRGPPRGGGRGRGGGFRG
RGRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03920 H/ACA ribonucleoprotein comple... Potri.013G058400
[exp]
0 1
AT1G43170 RPL3A, ARP1, EM... embryo defective 2207, ribosom... Potri.005G194500
[exp]
6.48 0.9481 ARP1.1
AT5G59240 Ribosomal protein S8e family p... Potri.001G262100
[exp]
7.07 0.9335 RPS8.3
AT5G62440 Protein of unknown function (D... Potri.013G022500
[exp]
9.21 0.8763
AT3G12860 NOP56-like pre RNA processing ... Potri.015G092900
[exp]
9.74 0.9053 NOP56.1
AT1G15250 Zinc-binding ribosomal protein... Potri.006G243300
[exp]
12.40 0.9179
AT2G34480 Ribosomal protein L18ae/LX fam... Potri.002G057600
[exp]
12.72 0.9321 RPL18.7
AT5G25757 RNA polymerase I-associated fa... Potri.006G241300
[exp]
20.00 0.9020
AT3G51800 ATEBP1, ATG2, E... A. THALIANA ERBB-3 BINDING PRO... Potri.006G102200
[exp]
21.54 0.8605
AT1G67430 Ribosomal protein L22p/L17e fa... Potri.015G094400
[exp]
21.81 0.9256 RPL17.2
AT3G05060 NOP56-like pre RNA processing ... Potri.013G032300
[exp]
22.13 0.8908

Potri.013G058400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.