Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03960 924 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 239 / 5e-72 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 228 / 1e-67 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G26360 216 / 3e-63 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 213 / 4e-62 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 196 / 5e-56 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G20890 177 / 7e-49 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 167 / 3e-45 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 164 / 4e-44 TCP-1/cpn60 chaperonin family protein (.1) AT4G08640 87 / 7e-20 ATP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034200 [exp] 1021 / 0 AT3G03960 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 237 / 4e-71 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.012G051300 [exp] 236 / 5e-71 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 233 / 2e-69 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.002G142700 [exp] 225 / 1e-66 AT3G20050 994 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.009G157400 [exp] 222 / 2e-65 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.004G195300 [exp] 218 / 8e-64 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.018G138200 [exp] 217 / 3e-63 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 216 / 6e-63 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007430 [exp] 976 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10010670 [exp] 969 / 0 AT3G03960 952 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10002625 [exp] 966 / 0 AT3G03960 936 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008670 [exp] 226 / 8e-67 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 225 / 2e-66 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10042966 [exp] 222 / 4e-65 AT3G20050 991 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10032467 [exp] 221 / 5e-65 AT3G20050 996 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10021150 [exp] 221 / 5e-65 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10017853 [exp] 220 / 2e-64 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 220 / 2e-64 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.013G058500.1 pacid=42811992 polypeptide=Potri.013G058500.1.p locus=Potri.013G058500 ID=Potri.013G058500.1.v4.1 annot-version=v4.1 ATGGGGTTCTCAATGCAACCATATGGAATGCAATCAATGTTAAAAGAAGGACACAAGCATTTATCAGGTCTCGATGAAGCCGTTCTCAAAAACATCGATG CTTGTAAGCAGTTGTCTGCTATCACTCGCACTTCTCTCGGCCCCAACGGTATGAATAAGATGGTTATTAATCACTTGGACAAACTCTTTGTCACCAATGA TGCTGCCACTATTGTAAATGAACTCGAGGTTCAGCATCCAGCTGCCAAGATTTTGGTCTTAGCTGGCAAGGCCCAACAAGAGGAAATTGGGGATGGAGCT AACTTGACCATCTCTTTTGCTGGAGAGATGCTTCAAAATGCGGACGAGCTTATTAGGATGGGCCTGCACCCCAGTGAGATCATCAGCGGTTACAATAAAG CAATCAACAAGGCAATTGAAATCTTAAGCGAACTGGTGGAGCCAGGTTCTGAAAACATGGATGTGAGGAATAAGGAGCAAGTTATTTGTCGGATGAAGGC TGCTGTTGCTAGCAAGCAATTCGGACAAGAAGATATTCTATGTAACCTCATTGCCGATGCGTGCATCCAGGTATGTCCCAAGAACCCAGTAAACTTCAAT GTGGACAATGTCCGGGTTGCAAAGCTTGTGGGAGGAGGTTTGATCAATTCTTCAATAGTCCGTGGTATGGTTTTGAAAGGTGATACTGTGGGAACCATAA AGAGAGTGGAGAAGGCAAAGGTTGCTGTGTTTGCTGGTGGTGTTGATACCTCTGCAACTGAAACCAAGGGAACCGTCCTAATTCACTCTGCTGAACAGCT AGAGAATTATGCTAAAACTGAAGAAGCTAAAGTTGAGGAGCTCATTAAGGCAGTGGCAGAAACTGGTGCCAAAGTAATTGTTAGCGGGGCAGCTGTTGGA GAGATGGCATTACATTTCTGTGAACGTTACAAACTCATGGTTCTGAAGATAAGCTCAAAGTTTGAACTGAGAAGATTTTGCCGCACCACTGGCGCTGTTG CTATCCTGAAGCTTAGTCCACCCAGCCCAGATGACTTGGGATGTGTAGATTCTATTTCGGTTGAGGAAATTGGTGGTGCTAGGGTCACTATTGTGAGAAA TGAAGAAGGTGGCAACTCTGTATGCACTGTGGTGCTACGAGGAAGTACAGATAGCATACTAGATGACCTTGAAAGAGCTGTTGATGATGGAGTCAATACT TACAAGGCAATGTGTAGGGACAGTCGAATAATACCTGGAGGGGCAGCTACTGAGATTGAGTTGGCCAAAAGACTTAGAGAATTCTCATTTAAAGAAACAG GATTGGATCAGTATGCTATTGCAAAGTTTGCTGAAAGTTTTGAGATGATACCTAAAACACTGGCTGAGAATGCTGGACTCAATGCAATGGAGATCATATC TTCTCTCTATGCTGAACATGCTTCTGGAAATACCAAAGTGGGCATCGACTTGGAGGAAGGTGTTTTCAAGGATGTATCAACCACTAATATCTGGGACCTC TATGTCACAAAGTTTTTTGCTCTCAAATATGCTGCAGATGCTGCCTGTACTGTATTGCGCGTGGACCAGATTATAATGGCAAAACCAGCTGGTGGTCCAA GGAGAGATGCTGCACCTGGAGGGATGGATGAAGATTAG
AA sequence Show only first row Show all	>Potri.013G058500.1 pacid=42811992 polypeptide=Potri.013G058500.1.p locus=Potri.013G058500 ID=Potri.013G058500.1.v4.1 annot-version=v4.1 MGFSMQPYGMQSMLKEGHKHLSGLDEAVLKNIDACKQLSAITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKILVLAGKAQQEEIGDGA NLTISFAGEMLQNADELIRMGLHPSEIISGYNKAINKAIEILSELVEPGSENMDVRNKEQVICRMKAAVASKQFGQEDILCNLIADACIQVCPKNPVNFN VDNVRVAKLVGGGLINSSIVRGMVLKGDTVGTIKRVEKAKVAVFAGGVDTSATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVAETGAKVIVSGAAVG EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAILKLSPPSPDDLGCVDSISVEEIGGARVTIVRNEEGGNSVCTVVLRGSTDSILDDLERAVDDGVNT YKAMCRDSRIIPGGAATEIELAKRLREFSFKETGLDQYAIAKFAESFEMIPKTLAENAGLNAMEIISSLYAEHASGNTKVGIDLEEGVFKDVSTTNIWDL YVTKFFALKYAADAACTVLRVDQIIMAKPAGGPRRDAAPGGMDED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03960			TCP-1/cpn60 chaperonin family ...		Potri.013G058500 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Potri.014G058500 [exp]	1.00	0.9109	BSTCP.1
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	6.32	0.8742
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.002G252900 [exp]	7.93	0.8576	Pt-CPN60.2
AT1G28395			unknown protein		Potri.011G057300 [exp]	8.48	0.8592
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.017G065800 [exp]	8.94	0.8635	PHB3.1
AT2G40010			Ribosomal protein L10 family p...		Potri.008G066300 [exp]	9.94	0.8798
AT3G62120			Class II aaRS and biotin synth...		Potri.014G112400 [exp]	11.48	0.8246
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.018G017600 [exp]	14.07	0.8289
AT3G18190			TCP-1/cpn60 chaperonin family ...		Potri.015G042600 [exp]	14.69	0.8003
					Potri.007G078350 [exp]	14.96	0.8313

Compare expression of checked genes

Potri.013G058500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.