Plant FIBer expression Database

Potri.013G058700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54385 599 / 0 ARM repeat superfamily protein (.1.2)
AT3G03970 353 / 1e-114 ARM repeat superfamily protein (.1.2.3)
AT2G07170 49 / 1e-05 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G033900
[exp]
1025 / 0 AT1G54385 608 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007428
[exp]
677 / 0 AT1G54385 549 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10010672
[exp]
671 / 0 AT1G54385 556 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10002627
[exp]
467 / 1e-158 AT1G54385 394 / 7e-131 ARM repeat superfamily protein (.1.2)
Lus10020266
[exp]
449 / 6e-152 AT1G54385 402 / 4e-134 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.013G058700.1 pacid=42810796 polypeptide=Potri.013G058700.1.p locus=Potri.013G058700 ID=Potri.013G058700.1.v4.1 annot-version=v4.1
ATGGGAAGAAATCTCAGTCCAATACTGCGGCAAGAATTGGCAAATCTTGACAAAGATGCTGATAGTCGTAAATCAGCAATGAAAGCACTGAAATCGTATG
TGAAAAGCTTGGATTCCAAGGCAATCCCACAATTTCTTGCTCAAGTTTCTGAAACCAAAGAAACTGGGTCTTTATCTGGCGAATACACAATTTCACTCTA
TGAAGTTCTTGCTCGTGTCCATGGAGTTAATATTGTTCCTCAGATTGATAGTATCATGACTACTATCATCAAGACTTTAGCTTCAAGTGCAGGGTATTTT
CCTCTTCAACAAGCATGCTCCAAGGTGGTACCAGCAATTGCAAGGTATGGCATTGAACCGACGACACCAGAGGATAAGAAAAGGCATATAATCCACTCAC
TCTGTAAGCCTCTTTCAGAAGCTCTCTTAGGTTCTCAAGAATGCCTGACTTCAGGGGCTGCCCTTTGCCTGAAGGCTCTAGTGGACTCAGATAATTGGCG
ATTTGCTTCGGATGAGATGGTGAATCGGGTTTGTCAGAATGTGGCTGTCGCTTTGGAGGAGAAGTGCACGCAAACTAATTCGCACATGGCCTTGGTGATG
GCTTTGGCTAAGCATAATGCTTTGATAGTTGAAGCATATGTAAGACTTTTGATACAATCAGGATTGCGTATCTTGAAAGCTGGGGTCTTGGAGGGTAATT
CTCAGAAACGATTATCAGCTATCCAAATGATCAATTTCTTGATGAAGTGTCTGGATCCTAGGAGCATATTCTCAGAGCTTGAGTTGATAATCGAGGAGAT
GGATAAGTGCCAGTCCGATCAGATGGCATTTGTGAGTGGAGCCGCATTTGAAGCTTTGCAAACTGCAAAGAAAATAGCTACAGAGAAAGGGACAAAATTT
GAGAAGAGTTCTGGTTCAGTTAGTGGATCAAACTTTGGCAGGAGAGACCACAGAGGGAGGAGAAATTTGTCCAGTGCCTATGGTGATCAATCTCCAGCAT
CTGTATCACCAGAATCACAGACTCTTGATTTCTTTATGGAATATGAATCTTTCACCGAGTCACCTATTTCAACAACTAATGTTTCTTCTAATGAGTGTGA
CCGTGGGAGTGTGAACCGAAAACTCTGGAGTTTTGAGAATGGAGGGGTGGACATATCTCTAAAAGATGGTTTATTTTCAGAGTTGTCTCAGGGAAGTCCC
ATCCATGATCCATTCTCTGATCAGTCTGGGCTATATGAGCTTACTGAAAACGGAGGAAGTTACATGGGTGAATTTGCAGGGTTCTTGCCTAGAAGTCCTA
GAAACAAACTATCGAGAAGCACCACTCCCAGCCCTCAGCGGTCACGATCTCATATAAATGTTGACAACATTAGCATCTTCACAACTCCCAGGAAGCTCGT
ACGTGCTCTTCAGGATCCTAATGATTTGGATTCAGACTTGTCAGAGAAACAAAATGGAAGGTTTGAAAGTCCATGCCCGAGCAAATTTGATTACAGCCCC
ACTCCGAGATTAAAACGAAATGGCTTTCAGCATGATGTGGGTTTAGAGGTCGATGAGAATGGAAAGTCGTATACTGGCGTTGAGGAGTTCCAAGGTGCCT
CTGAATCAGTGGCATCAACAGATGACATTCCAGTCAAAACTGATGTGCAAGCATCTCCAGAGGTGATTCGTGGAAATAAACCTTATGCTAATAAATTTTG
CACTGAAAAAGATGCGAGGAAGACTTCATCTATTTTAGCTGTTGGGTTCTGGATTGCTTTGCTAGCAATTTTTGCCTCATTAAAGTGCATTTATCTGCAA
GATGATGACCATCATATGGTTCCAACTTAG
AA sequence
>Potri.013G058700.1 pacid=42810796 polypeptide=Potri.013G058700.1.p locus=Potri.013G058700 ID=Potri.013G058700.1.v4.1 annot-version=v4.1
MGRNLSPILRQELANLDKDADSRKSAMKALKSYVKSLDSKAIPQFLAQVSETKETGSLSGEYTISLYEVLARVHGVNIVPQIDSIMTTIIKTLASSAGYF
PLQQACSKVVPAIARYGIEPTTPEDKKRHIIHSLCKPLSEALLGSQECLTSGAALCLKALVDSDNWRFASDEMVNRVCQNVAVALEEKCTQTNSHMALVM
ALAKHNALIVEAYVRLLIQSGLRILKAGVLEGNSQKRLSAIQMINFLMKCLDPRSIFSELELIIEEMDKCQSDQMAFVSGAAFEALQTAKKIATEKGTKF
EKSSGSVSGSNFGRRDHRGRRNLSSAYGDQSPASVSPESQTLDFFMEYESFTESPISTTNVSSNECDRGSVNRKLWSFENGGVDISLKDGLFSELSQGSP
IHDPFSDQSGLYELTENGGSYMGEFAGFLPRSPRNKLSRSTTPSPQRSRSHINVDNISIFTTPRKLVRALQDPNDLDSDLSEKQNGRFESPCPSKFDYSP
TPRLKRNGFQHDVGLEVDENGKSYTGVEEFQGASESVASTDDIPVKTDVQASPEVIRGNKPYANKFCTEKDARKTSSILAVGFWIALLAIFASLKCIYLQ
DDDHHMVPT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54385 ARM repeat superfamily protein... Potri.013G058700
[exp]
0 1
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
1.41 0.9373
AT4G33400 Vacuolar import/degradation, V... Potri.002G126500
[exp]
1.41 0.9377
AT1G54385 ARM repeat superfamily protein... Potri.019G033900
[exp]
3.87 0.9372
AT5G41880 POLA4, POLA3 DNA primases;DNA primases (.1) Potri.003G104700
[exp]
5.00 0.9254
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Potri.016G070800
[exp]
5.74 0.9108
AT5G27670 HTA7 histone H2A 7 (.1) Potri.005G026500
[exp]
6.00 0.9245 HTA914
AT1G53140 DRP5A Dynamin related protein 5A (.1... Potri.011G118500
[exp]
6.63 0.9275
AT2G42260 PYM, UVI4 POLYCHOME, uv-b-insensitive 4 ... Potri.006G057800
[exp]
7.48 0.9240
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Potri.004G031300
[exp]
8.48 0.9178
AT4G13690 unknown protein Potri.003G177900
[exp]
9.16 0.8941

Potri.013G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.