Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54390 371 / 1e-130 ING2 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) AT3G24010 102 / 8e-26 ATING1 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033800 [exp] 454 / 4e-163 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Potri.003G174000 [exp] 105 / 5e-27 AT3G24010 281 / 5e-96 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033830 [exp] 351 / 1e-122 AT1G54390 374 / 9e-132 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10018974 [exp] 298 / 1e-101 AT1G54390 328 / 2e-112 INHIBITOR OF GROWTH 2, PHD finger protein-related (.1.2.3.4.5.6) Lus10043140 [exp] 105 / 4e-27 AT3G24010 273 / 5e-93 ARABIDOPSIS THALIANA INHIBITOR OF GROWTH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10032609 [exp] 59 / 1e-09 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF12998 [poplar] [flax] ING Inhibitor of growth proteins N-terminal histone-binding
Representative CDS sequence Show only first row Show all	>Potri.013G058800.1 pacid=42811727 polypeptide=Potri.013G058800.1.p locus=Potri.013G058800 ID=Potri.013G058800.1.v4.1 annot-version=v4.1 ATGGCAATTGCACGAACTGGAGTCTACGTTGACGATTACCTGGAGTATGCAAATACATTGCCAGCTGAGCTTCAACGGCTTCTTAATACTGTTAGAGAGC TTGATGACCGATCCCAATCAATGATAAACCAAACAAGGCAACAGACAAACTATTGTCTGGGATTGGCATCTCAAAGCTTAAGAAAAGGAAATGGTAGTAT TTATAATTGCTACAACACTAATAACAATGAAGAGGATGAGGCAGTTGAGAAAATGAGGAAGGATATCGAGGCAAATCAGGATAGTGCATTGAGTTTGTGT ACAGAGAAGGTTTTGTTGGCACGGCAAGCTTATGACCTTATAGACAGCCATGTAAAACGACTTGATGAGGATCTGAACAACTTTGCAGAAGATTTGAAGC AAGAGGGAAAACTATCACCAGATGAACCAGCAATCCTTCCTCCACTGCCTATAATAGTCCCTAAAATTGAGAAACGCAGGAATTTTTACGGAACACCTCA ATCTCAATCGAAAAGGATTGATTTCAGGGATCGGGATTGGGACAGAGAGCGTGATAGGGATTTTGAGCTCATGCCTCCTCCAGGAAGCCATAGAAAGGAT TTCCCTGTTCCTGTTGAAGTTGAGCAACCCATTGATCCCAATGAACCTACCTACTGTGTCTGCCATCAGGTGTCCTTTGGAGATATGATTGCTTGTGATA ATGAGAATTGCCAAGGAGGTGAATGGTTCCATTATTCATGTGTTGGGTTGACACCGGAGACAAGATTCAAGGGAAAATGGTACTGTCCAACCTGCAGGAA TCTACCCCAATTTCAATGGTAG
AA sequence Show only first row Show all	>Potri.013G058800.1 pacid=42811727 polypeptide=Potri.013G058800.1.p locus=Potri.013G058800 ID=Potri.013G058800.1.v4.1 annot-version=v4.1 MAIARTGVYVDDYLEYANTLPAELQRLLNTVRELDDRSQSMINQTRQQTNYCLGLASQSLRKGNGSIYNCYNTNNNEEDEAVEKMRKDIEANQDSALSLC TEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGKLSPDEPAILPPLPIIVPKIEKRRNFYGTPQSQSKRIDFRDRDWDRERDRDFELMPPPGSHRKD FPVPVEVEQPIDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRNLPQFQW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Potri.013G058800 [exp]	0	1
AT3G04830			Protein prenylyltransferase su...		Potri.013G038700 [exp]	6.32	0.7700
AT1G26750			unknown protein		Potri.010G165500 [exp]	12.96	0.7812
AT4G31460			Ribosomal L28 family (.1)		Potri.018G006900 [exp]	21.77	0.7954
AT2G31270		ATCDT1A, CDT1A,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Potri.004G067700 [exp]	25.29	0.6936
AT5G37350			Serine/threonine-protein kinas...		Potri.015G096100 [exp]	27.22	0.7328
AT3G52860			unknown protein		Potri.014G127900 [exp]	28.98	0.7215
AT3G53740			Ribosomal protein L36e family ...		Potri.015G145800 [exp]	34.64	0.7922
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	37.14	0.7858
AT4G27090			Ribosomal protein L14 (.1)		Potri.002G035700 [exp]	49.11	0.7773
AT2G02470	Alfin	AL6	alfin-like 6 (.1.2)		Potri.003G044700 [exp]	52.91	0.6788

Compare expression of checked genes

Potri.013G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.