Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13650 1282 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 627 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 619 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 593 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G33170 572 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 566 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 555 / 0 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 548 / 1e-178 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 542 / 1e-178 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 537 / 1e-175 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G047800 [exp] 665 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G129100 [exp] 644 / 0 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 627 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 599 / 0 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 598 / 0 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 595 / 0 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G068600 [exp] 595 / 0 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G184800 [exp] 593 / 0 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 593 / 0 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018978 [exp] 1526 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 629 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 621 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 610 / 0 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 568 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 564 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 560 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013578 [exp] 556 / 0 AT1G16480 1036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004081 [exp] 552 / 1e-180 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 530 / 4e-174 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.013G058900.3 pacid=42810765 polypeptide=Potri.013G058900.3.p locus=Potri.013G058900 ID=Potri.013G058900.3.v4.1 annot-version=v4.1 ATGCTCACTCAAATCCAACGAGAACCCATGATTCTTAATCAGATTTCCCTTCGTGGCTCACTCTCAAAATCCTTCCTGTCTCACTTCCCGCGCAAATTCA ACCCCACTCCCTCTCTAAAACCCTCCCAAAACCCCCGCAAGTGTTTTAGCTGGGATTTAAGTAGACCAACTCTAGCTTGCTATGCATTCGATGAATTTCC CAACCAAGTAAATGAAGAGAATTTGAAAGGGATTGCGTTTCTGCAGTTGATGGAACACCGTGGGATTTGCGCGAATTGTCAAACATATATATGGCTTTTA GACCTTTGTTTGAATTCTGGGTCTTTGGTAGAATGCAAGAAACTTCATGGGAAGATTTTGAAGTTGGGATTTGGCAATGAAAGTGTTTTGTGTAACAAGC TTGTTGATGTTTATTTTGCGTTAGGTGATTTGGATGGTGTAGTCAAGGTTTTCGAGGATATGCCTAATAGAAGTGTGCGAAGTTGGGATAAGATAATTTC TGGTTTTATGGAAAAGAAAATGAGTAACAGAGTGCTGGATCTATTTTCGTGCATGATTGAGGAAAATGTAAGTCCAACTGAAATTTCTTTTGCCAGTGTT TTAAGGGCTTGTTCTGGTCATAGAATTGGTATTCGCTACGCAGAGCAGATTCATGCTAGGATTATTTGTCATGGTCTTCTTTGTAGTCCAATTATTTCTA ATCCTTTGATTGGTTTGTATGCCAAAAATGGGCTTATAATATCTGCCAGAAAGGTATTTGATAATTTATGCACGAAGGATAGTGTTTCTTGGGTGGCTAT GATCTCTGGTTTTTCACAGAATGGATATGAAGAAGAGGCCATTCACCTCTTTTGTGAAATGCATACAGCGGGAATTTTTCCCACTCCCTATGTTTTTTCG AGTGTTCTAAGTGGCTGCACAAAAATAAAGTTATTTGATGTTGGGGAGCAACTTCATGCCCTAGTTTTCAAGTATGGATCCTCTTTGGAAACTTATGTCT GCAATGCTCTTGTCACATTGTATTCCCGAATGCCAAACTTTGTATCTGCTGAAAAAGTTTTCAGCAAAATGCAGTCTAAGGATGAAGTTTCATTTAACTC GCTGATCTCTGGTCTAGCTCAGCAGGGATTTAGTGATGCTGCTTTGGAATTGTTCACGAAAATGAAACGGGATTACTTGAAACCAGACTGTGTTACTGTT GCAAGTCTCTTGAGTGCCTGTGCATCAAATGGGGCCCTTTGTAAGGGAGAACAGCTTCATTCATATGTGATAAAAGCAGGGATATCTTCAGACATGATTG TTGAAGGTGCTTTGCTTGATCTTTATGTGAACTGCTCTGATATAAAAACAGCCCATGAAATGTTTCTCACAGCACAGACAGAAAATGTGGTTTTGTGGAA TGTGATGCTTGTGGCTTTTGGGAAGTTAGATAATTTAAGTGAGTCATTTCGAATATTTAGACAAATGCAGATTAAAGGCCTGATACCTAATCAATTCACC TACCCTAGTATTTTGAGAACTTGCACCTCAGTGGGTGCTCTTGATCTAGGAGAGCAGATTCATACTCAAGTCATAAAGACTGGCTTTCAGTTTAATGTGT ATGTTTGTAGCGTGCTCATAGATATGTATGCTAAGCATGGAAAACTAGATACTGCCCATGTAATTCTTAGAACACTTACCGAGGATGATGTTGTGTCATG GACAGCTCTGATCTCAGGGTATGCACAGCACAATTTGTTTGCTGAAGCTCTTAAACATTTCAAAGAAATGCTTAAGCGAGGGATCCAATCTGATAACATA GGTTTCTCTAGTGCAATCAGTGCATGTGCAGGTATTCAAGCTCTAAATCAAGGACGGCAAATTCATGCTCAATCATACGTTTCTGGTTATTCAGAAGACC TTTCAATTGGTAATGCACTTGTTAGTCTTTATGCCAGATGTGGTAGGATCAAAGAAGCCTACCTGGAATTTGAGAAAATAGATGCCAAAGATAGTATATC ATGGAATGGATTGATCTCAGGTTTTGCACAGAGTGGATACTGTGAGGACGCACTGAAGGTCTTTGCTCAAATGAATAGAGCTAAACTAGAAGCTAGTTTT TTCACATTTGGCTCTGCTGTGAGTGCTGCTGCTAATATTGCAAACATAAAACAAGGGAAGCAGATCCATGCGATGATTATAAAAAGAGGGTTTGATTCAG ATATTGAAGTTTCCAATGCTTTAATCACATTTTATGCAAAGTGTGGTAGCATTGAAGATGCCAGGAGGGAGTTTTGTGAGATGCCAGAGAAAAATGATGT TTCTTGGAATGCCATGATCACGGGCTATTCTCAACATGGATATGGTAATGAAGCAGTGAATCTTTTTGAGAAGATGAAACAGGTTGGTGAGATGCCAAAC CACGTCACTTTTGTGGGAGTTTTATCAGCCTGTAGCCATGTGGGGTTGGTTACTAAGGGTCTTGGCTACTTTGAGTCTATGAGCAAAGAGCACGGCTTAG TGCCTAAGCCTGCACACTATGCGTGTGTTGTGGATCTGATCAGCCGAGCAGGGTTTTTGAGTCGTGCAAGAAAGTTTATCGAGGAGATGCCAATTGAACC AGATGCAACGATTTGGAGGACACTTTTGAGTGCTTGTACAGTTCATAAGAATGTGGAAGTTGGAGAGTTTGCTGCTCAGCATCTTCTGGAATTGGAACCT GAAGATTCAGCGACTTATGTTCTTTTGTCAAATATGTATGCTGTGTCTGGGAAATGGGATTGCAGGGATCAGACCAGGCAAATGATGAGAAACAGGGGTG TGAAGAAGGAGCCCGGTCGTAGCTGGATAGAGGTTAAGAATTCGGTTCACGCATTCTATGTTGGTGATCGACTCCATCCACTAGCAGATAAAATATACGA GTTCTTGGCTGAACTAAATAAAAAAGCAGCTGAAATTGGTTATTTTCAAGATCGATATAGCCTTTTGAATGATGTAGAGCAGGAGCAGAAGGATCCAACT GTTTACATTCACAGTGAGAAACTGGCTATTACGTTTGGACTCCTTAGTTTGTCTGACACTGTTCCAATACATGTAATGAAGAACCTTCGTGTATGTAAAG ATTGCCACTCATGGATTAAATTTGTATCAAAGATTTCAAATCGAGCAATTATAGTCCGAGATGCATACCGCTTTCATCATTTTGAAGGTGGTATTTGTTC ATGTAAAGATTATTGGTAA
AA sequence Show only first row Show all	>Potri.013G058900.3 pacid=42810765 polypeptide=Potri.013G058900.3.p locus=Potri.013G058900 ID=Potri.013G058900.3.v4.1 annot-version=v4.1 MLTQIQREPMILNQISLRGSLSKSFLSHFPRKFNPTPSLKPSQNPRKCFSWDLSRPTLACYAFDEFPNQVNEENLKGIAFLQLMEHRGICANCQTYIWLL DLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASV LRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFS SVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDAALELFTKMKRDYLKPDCVTV ASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLKRGIQSDNI GFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASF FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPN HVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEP EDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPT VYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.013G058900 [exp]	0	1
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	2.00	0.9330
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.009G106800 [exp]	4.47	0.9144
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	5.47	0.9188
AT1G65070			DNA mismatch repair protein Mu...		Potri.004G041900 [exp]	6.00	0.8962
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	6.63	0.9307
AT5G24690			Protein of unknown function (D...		Potri.003G019600 [exp]	7.74	0.9161
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	12.00	0.9081
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.005G020500 [exp]	14.00	0.8888
AT3G29290		EMB2076	embryo defective 2076, Pentatr...		Potri.017G090500 [exp]	16.12	0.8905
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	16.24	0.9084

Compare expression of checked genes

Potri.013G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.