Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 297 / 1e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18210 273 / 7e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G04000 259 / 8e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 96 / 8e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 94 / 2e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 91 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G52340 89 / 1e-20 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 87 / 4e-20 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G30670 84 / 4e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059100 [exp] 340 / 1e-118 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 324 / 2e-112 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033600 [exp] 236 / 2e-77 AT3G03980 279 / 4e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 113 / 3e-29 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 112 / 4e-29 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G024300 [exp] 95 / 6e-23 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 94 / 1e-22 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089700 [exp] 92 / 7e-22 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 92 / 7e-22 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020265 [exp] 338 / 9e-118 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 322 / 3e-111 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 113 / 2e-29 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 107 / 2e-26 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 98 / 6e-24 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 97 / 2e-23 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 93 / 6e-22 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 91 / 3e-21 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020019 [exp] 90 / 3e-21 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10016354 [exp] 89 / 1e-20 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.013G059000.1 pacid=42810791 polypeptide=Potri.013G059000.1.p locus=Potri.013G059000 ID=Potri.013G059000.1.v4.1 annot-version=v4.1 ATGGCCGGTGACATTACCAAGGAGGTGGTGTCCTCTTCCCTTCCTCTTGATGGCCTGGTTGCAATAGTAACTGGTGCTTCAGGTGGCATTGGCCGAGCCA TTTCTATCCACCTTCACTCCCTCGGTGCAAGAGTTGTCATCAACTATGCTTCGAACTCCAATCAAGCTGATCTCCTAGCTTCTGAGCTCAACGCCTCAGC ACCGTCTTCACATCCTCAAGCAATCGCCATCAAAGCTGACGTTTCAGACCCAGATCAAGTCAAGCAACTATTCAGCAGAACTGAAGAAGAATTTGGCTCA AAGCTTCATATACTTGCACATTGTGCTGGGGTGCTCGATCCAAAGTTTCCCATCTTGGCTAACACAACAGTGGAGGATTGGGATAAGACCTTTAATGTCA ATACTAAAGGGGCATTCCTGTGTTGTCGAGAGGCAACTAATCGGTTGGCCCATGGGGGTGGTGGAAGAATCATCATGATATCAACATCTCTTGTTGGAGC ACCCACACCAGGTTATGCGGCCTATACTGCTTCCAAGGCAGCCGTGGAGACAATGACAAGGATAGTGGCCAAGGAGCTGAAGGGTACAGGAATAACTGCT AATTGTGTTGCTCCAGGTCCTGTGGCGACAGAATTGTTTTTTGCAGGTAAAACTGAGGAAACATTAAAGAGAATTGCGGATGCTTGCCCTTTGAACCGAC TTGGAGAGCCCGAGGATATAAGTAAGGTTGTAGGATTCATAGCTAGTGATGCTGGGGAGTGGATCAATGGCCAGGTTATTAGAGTTAACGGTGGATTTGT TGTTTAA
AA sequence Show only first row Show all	>Potri.013G059000.1 pacid=42810791 polypeptide=Potri.013G059000.1.p locus=Potri.013G059000 ID=Potri.013G059000.1.v4.1 annot-version=v4.1 MAGDITKEVVSSSLPLDGLVAIVTGASGGIGRAISIHLHSLGARVVINYASNSNQADLLASELNASAPSSHPQAIAIKADVSDPDQVKQLFSRTEEEFGS KLHILAHCAGVLDPKFPILANTTVEDWDKTFNVNTKGAFLCCREATNRLAHGGGGRIIMISTSLVGAPTPGYAAYTASKAAVETMTRIVAKELKGTGITA NCVAPGPVATELFFAGKTEETLKRIADACPLNRLGEPEDISKVVGFIASDAGEWINGQVIRVNGGFVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13180			NAD(P)-binding Rossmann-fold s...		Potri.013G059000 [exp]	0	1
AT1G49030			PLAC8 family protein (.1)		Potri.012G060900 [exp]	9.38	0.8482
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088900 [exp]	12.64	0.8591
AT1G30760			FAD-binding Berberine family p...		Potri.011G159400 [exp]	16.79	0.8488
AT1G73325			Kunitz family trypsin and prot...		Potri.019G124500 [exp]	21.21	0.8454
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088800 [exp]	29.22	0.8430
AT1G59870		ATABCG36, ABCG3...	PENETRATION 3, ARABIDOPSIS PLE...		Potri.001G189500 [exp]	29.59	0.8317
AT5G09360		LAC14	laccase 14 (.1)		Potri.019G088401 [exp]	30.16	0.8342
AT1G30760			FAD-binding Berberine family p...		Potri.011G160900 [exp]	30.75	0.8338
AT5G48230		EMB1276, ACAT2	EMBRYO DEFECTIVE 1276, acetoac...		Potri.014G168700 [exp]	30.93	0.8105
AT2G26190			calmodulin-binding family prot...		Potri.006G147900 [exp]	34.08	0.8290

Compare expression of checked genes

Potri.013G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.