Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GTF901,Pt-TBP1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55520 381 / 7e-137 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) AT3G13445 376 / 4e-135 TFIID-1, TBP1 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) AT3G13440 42 / 0.0001 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033300 [exp] 405 / 3e-146 AT1G55520 376 / 4e-135 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020260 [exp] 403 / 3e-145 AT1G55520 380 / 3e-136 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10002634 [exp] 401 / 2e-144 AT1G55520 382 / 7e-137 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10031531 [exp] 339 / 3e-120 AT3G13445 333 / 4e-118 TRANSCRIPTION FACTOR IID-1, TATA binding protein 1 (.1.2) Lus10017716 [exp] 127 / 4e-37 AT1G55520 125 / 1e-36 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10015150 [exp] 101 / 4e-28 AT1G55520 100 / 3e-28 A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 (.1.2) Lus10033675 [exp] 53 / 3e-09 AT3G24060 72 / 4e-17 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0407 [poplar] [flax] TBP-like PF00352 [poplar] [flax] TBP Transcription factor TFIID (or TATA-binding protein, TBP)
Representative CDS sequence Show only first row Show all	>Potri.013G059300.1 pacid=42812679 polypeptide=Potri.013G059300.1.p locus=Potri.013G059300 ID=Potri.013G059300.1.v4.1 annot-version=v4.1 ATGGCAGAGCAAGGAGGCTTGGAAGGTAGCCAGCCAGTGGATCTCTCCAAGCATCCTTCTGGCATTGTTCCCACCCTCCAGAACATTGTTTCAACAGTGA ACTTGGATTGCAAGCTGGAACTTAAGCAAATTGCCCTGCAAGCCCGTAATGCAGAATATAATCCCAAGCGTTTTGCTGCAGTCATCATGCGGATTAGGGA ACCAAAAACTACAGCATTGATTTTTGCCTCTGGCAAGATGGTGTGCACAGGTGCCAAGAGCGAACAGCAATCTAAACTGGCTGCGAGAAAGTATGCTCGA ATTATCCAAAAGCTTGGCTTTGCTGCCAAATTTAAGGACTTCAAGATTCAGAATATTGTTGGCTCTTGTGATGTCAAGTTCCCCATTAGACTTGAAGGGC TCGCATACTCCCATGGTGCTTTCTCAAGTTATGAACCTGAACTCTTTCCGGGTCTAATATATCGCATGAAACAACCAAAGATTGTGCTCCTTATTTTTGT CTCTGGAAAAATTGTGATCACTGGAGCCAAGGTGAGAGAGGAGACATACACAGCCTTTGAAAATATATACCCTGTCCTTACAGAGTTCAGGAAAGTCCAG CAATGA
AA sequence Show only first row Show all	>Potri.013G059300.1 pacid=42812679 polypeptide=Potri.013G059300.1.p locus=Potri.013G059300 ID=Potri.013G059300.1.v4.1 annot-version=v4.1 MAEQGGLEGSQPVDLSKHPSGIVPTLQNIVSTVNLDCKLELKQIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYAR IIQKLGFAAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVREETYTAFENIYPVLTEFRKVQ Q

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Potri.013G059300 [exp]	0	1	GTF901,Pt-TBP1.3
AT1G06500			unknown protein		Potri.002G058800 [exp]	1.41	0.8023
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	1.73	0.8522
AT5G12230		MED19A	unknown protein		Potri.004G193800 [exp]	4.00	0.7657
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.012G104700 [exp]	10.48	0.7619
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Potri.002G248700 [exp]	14.07	0.7195
AT3G12040			DNA-3-methyladenine glycosylas...		Potri.016G060000 [exp]	18.57	0.7943
AT4G35140			Transducin/WD40 repeat-like su...		Potri.009G139000 [exp]	21.35	0.6957
AT5G10695			unknown protein		Potri.018G007300 [exp]	24.91	0.7166
AT1G17780			unknown protein		Potri.001G376800 [exp]	25.09	0.7536
AT4G26680			Tetratricopeptide repeat (TPR)...		Potri.014G166001 [exp]	26.92	0.7062

Compare expression of checked genes

Potri.013G059300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.