Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23840 339 / 6e-118 HNH endonuclease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033200 [exp] 489 / 2e-177 AT2G23840 332 / 3e-115 HNH endonuclease (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010678 [exp] 372 / 6e-131 AT2G23840 313 / 2e-107 HNH endonuclease (.1) Lus10007425 [exp] 308 / 9e-106 AT2G23840 249 / 1e-82 HNH endonuclease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0263 [poplar] [flax] His-Me_finger PF01844 [poplar] [flax] HNH HNH endonuclease
Representative CDS sequence Show only first row Show all	>Potri.013G059500.1 pacid=42811028 polypeptide=Potri.013G059500.1.p locus=Potri.013G059500 ID=Potri.013G059500.1.v4.1 annot-version=v4.1 ATGGCTCAATTTACAGCACATGGTCGCTTGAAGTTTCCGTTTAACAATGATGGGGCTAGCTGGAAACTTCTTGGGAATGATTTTGTTGGTGGGTTGAGAT CATTTCAGAGTCAGAAGAGAAAAATCAGGTTTCTCGGTACTAGTGGTACAAGGTTATATGCTGCTTCTTCTTTGAGCAAGAAACCCAAGCATTTTTACAC TGAGGCAAGTCAAAGTGTTAGTGAGGTTAATGATGATAGTGAAGAAGATTATGAGAGGGATGAATTAGCTTGCTTTAGAGGCCTTGTCTTGGATATCTCT TACAGGCCAGTCAATGTTGTGTGCTGGAGGCGTGCTATATGTTTGGAATTCATGGAGAAGGCTGATGTACTAGAATATTATGATCAGGCTGTAAATTCCC CAAGCGGATCCTTTTACATACCAGCTGTATTAAGGGTTCCACATCTACTACAGGTCGTTAAGAGAAGAAGAATCAAAAGCAACCTTAGTCGCAAGAATAT ACTTTATAGGGACAACTATACTTGTCAGTATTGTTCTTCTCGCGAGAACTTGACCATTGACCATGTTCTGCCAACTGCACGAGGAGGTGAATGGAAATGG GAAAATCTGGTTGCTGCTTGTGCCAAATGCAACTCAAAGAAGGGTCAAAAAACTCCAGAGGAAGCAAACATGAAGCTGAGTAAGGTCCCCAAGGCCCCTA AAGATTATGACATACTTGCCATACCCCTAACAAGTGCAGCAATAAGGATGCTGAGGATGAGAAAGGGAATGCCTGAAGAGTGGCAACAATATCTAGCGAG GCCATCATCAGAGCCATGA
AA sequence Show only first row Show all	>Potri.013G059500.1 pacid=42811028 polypeptide=Potri.013G059500.1.p locus=Potri.013G059500 ID=Potri.013G059500.1.v4.1 annot-version=v4.1 MAQFTAHGRLKFPFNNDGASWKLLGNDFVGGLRSFQSQKRKIRFLGTSGTRLYAASSLSKKPKHFYTEASQSVSEVNDDSEEDYERDELACFRGLVLDIS YRPVNVVCWRRAICLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNILYRDNYTCQYCSSRENLTIDHVLPTARGGEWKW ENLVAACAKCNSKKGQKTPEEANMKLSKVPKAPKDYDILAIPLTSAAIRMLRMRKGMPEEWQQYLARPSSEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23840			HNH endonuclease (.1)		Potri.013G059500 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Potri.007G072600 [exp]	1.00	0.9799
AT3G26580			Tetratricopeptide repeat (TPR)...		Potri.013G090000 [exp]	2.00	0.9660
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	2.44	0.9712
AT1G07040			unknown protein		Potri.008G194800 [exp]	3.16	0.9640
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	5.47	0.9618
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Potri.002G127100 [exp]	5.65	0.9501
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Potri.005G125800 [exp]	8.36	0.9523
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.009G139600 [exp]	8.94	0.9361
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231200 [exp]	9.16	0.9278
AT1G67910			unknown protein		Potri.018G079200 [exp]	10.48	0.9316

Compare expression of checked genes

Potri.013G059500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.