Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25830 128 / 1e-34 GATA GATA12 GATA transcription factor 12 (.1) AT4G32890 126 / 3e-34 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 123 / 8e-34 GATA GATA4 GATA transcription factor 4 (.1) AT2G45050 122 / 4e-33 GATA GATA2 GATA transcription factor 2 (.1) AT3G24050 122 / 8e-33 GATA GATA1 GATA transcription factor 1 (.1) AT4G36240 120 / 2e-32 GATA GATA7 GATA transcription factor 7 (.1) AT3G54810 121 / 4e-32 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT1G08010 120 / 5e-32 GATA GATA11 GATA transcription factor 11 (.1.2) AT5G66320 121 / 6e-32 GATA GATA5 GATA transcription factor 5 (.1.2) AT3G51080 119 / 2e-31 GATA GATA6 GATA transcription factor 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G033000 [exp] 438 / 2e-156 AT4G32890 127 / 2e-34 GATA transcription factor 9 (.1) Potri.008G038900 [exp] 133 / 2e-36 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.007G016600 [exp] 129 / 8e-35 AT3G51080 179 / 2e-53 GATA transcription factor 6 (.1) Potri.010G223300 [exp] 128 / 1e-34 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 126 / 3e-34 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.002G142800 [exp] 124 / 3e-34 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.014G058600 [exp] 124 / 4e-34 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.001G188500 [exp] 124 / 3e-33 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.009G123400 [exp] 122 / 1e-32 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028178 [exp] 122 / 9e-33 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10023684 [exp] 118 / 3e-32 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10016092 [exp] 119 / 6e-32 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2) Lus10037994 [exp] 122 / 9e-32 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10009227 [exp] 121 / 1e-31 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10011430 [exp] 120 / 1e-31 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 119 / 1e-31 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10037398 [exp] 119 / 1e-31 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10041810 [exp] 117 / 1e-31 AT5G66320 177 / 1e-54 GATA transcription factor 5 (.1.2) Lus10031096 [exp] 114 / 1e-31 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.013G059600.1 pacid=42811315 polypeptide=Potri.013G059600.1.p locus=Potri.013G059600 ID=Potri.013G059600.1.v4.1 annot-version=v4.1 ATGGATTTTTGCCGGAATGCGACAGTTTCCACTGAGTATCACCAGCAAGAGAAGGTCCTTGCTTCCCCTCCTCCTTGCTCTAAACTTGGTGCTGCTGCTG CTGCTTTGACAGCTACTACTAGTCCTCTTGATGACCCTTTCTCTGCTCAAAACACGGAAGTTGATTTTAGCTCGGAATGGCTGTCAGTATTTGTAGAGGA CTGCTTGTCCAGCACAGGAAACTACCTCCCAGCACCCACAGTTGAAGCTCAAAAGCCAAATACAGAAGAAAACCCCCCAAAAAACTGGCAACGGAAACCC CAAGACCAAGAAGACCCATCTTCCTTGAAGAAACTTGTAATCCCAGGAAAGTCAAGAAGCAAGAGGAGAAGGCTTCCTGGTGACAAGACCAGAAACCCAT TAACTAGCTGGTGTTATACCAACCAAGCCTTTAATAATTTGACCAGCTCAGACCCTCCTTTGCTTCAGCAAACATATTGGCTAGCTGACAGTGAACTCAT TATGCCCATAAAAGAGGACAGCAACAACACAGACATGGATAATGAAGTGCAAGAAGAATCAGGAGTGGGAGTGCACGACGAGGACATAGGAAAGGTAGTA GCTGTAGTAGGGAGTAATGGTAGCAAGGACAGTTTAGGCGTTTTGGAAAGCAACAATGGACAGCAGCAACCAAGGAGGTGCACCCATTGCCTAGCACAAA GGACCCCACAATGGAGGGCAGGACCACTGGGTCCAAAAACACTTTGTAATGCATGTGGAGTGAGATACAAGTCAGGCAGGCTATTGCCAGAGTATAGGCC AGCAAAGAGTCCTACTTTTGTGAGCTATTTACACTCGAATTCTCACAAGAAGGTAATGGAGATGAGAATGGCTGGCTTTAATACCTAG
AA sequence Show only first row Show all	>Potri.013G059600.1 pacid=42811315 polypeptide=Potri.013G059600.1.p locus=Potri.013G059600 ID=Potri.013G059600.1.v4.1 annot-version=v4.1 MDFCRNATVSTEYHQQEKVLASPPPCSKLGAAAAALTATTSPLDDPFSAQNTEVDFSSEWLSVFVEDCLSSTGNYLPAPTVEAQKPNTEENPPKNWQRKP QDQEDPSSLKKLVIPGKSRSKRRRLPGDKTRNPLTSWCYTNQAFNNLTSSDPPLLQQTYWLADSELIMPIKEDSNNTDMDNEVQEESGVGVHDEDIGKVV AVVGSNGSKDSLGVLESNNGQQQPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAGFNT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.013G059600 [exp]	0	1
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	1.73	0.8373
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	3.00	0.8665
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.015G132600 [exp]	4.24	0.8068
					Potri.010G144600 [exp]	7.74	0.8527
AT4G34950			Major facilitator superfamily ...		Potri.004G173400 [exp]	9.38	0.8091
AT5G20790			unknown protein		Potri.006G137700 [exp]	10.48	0.7821
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	15.09	0.8028
AT2G40330		RCAR9, PYL6	regulatory components of ABA r...		Potri.010G183900 [exp]	15.16	0.7804
AT2G35470			unknown protein		Potri.001G138300 [exp]	15.55	0.8032
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	16.09	0.8259

Compare expression of checked genes

Potri.013G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.