Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64760 699 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G19440 699 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT3G04010 653 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 635 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 512 / 1e-179 O-Glycosyl hydrolases family 17 protein (.1) AT3G24330 489 / 3e-170 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 480 / 3e-167 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 472 / 4e-164 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 438 / 1e-150 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 423 / 2e-144 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032900 [exp] 847 / 0 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.007G078900 [exp] 559 / 0 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G072300 [exp] 514 / 1e-180 AT3G24330 647 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G280700 [exp] 503 / 2e-175 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 490 / 3e-171 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 488 / 2e-170 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 488 / 6e-170 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G002100 [exp] 465 / 2e-161 AT4G17180 711 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 463 / 1e-160 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031098 [exp] 730 / 0 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 727 / 0 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10020261 [exp] 719 / 0 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10006811 [exp] 506 / 6e-177 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10040579 [exp] 493 / 1e-172 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 491 / 6e-172 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10005788 [exp] 501 / 5e-168 AT5G64790 565 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 474 / 1e-164 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 471 / 2e-163 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10043075 [exp] 466 / 3e-161 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.013G059700.1 pacid=42812546 polypeptide=Potri.013G059700.1.p locus=Potri.013G059700 ID=Potri.013G059700.1.v4.1 annot-version=v4.1 ATGGGTACTTGTTGGTTTCTTAGATTGGTTTTGATTTTAGGCCTTCTAGGGAGTTGTGTTCATGGTCTTGGTGTTAATTGGGGAACTATGGCTATACGTA AATTGTCACCAGAAACAGTTGTTCAAATGTTGAAGGATAATGGCATCCTAAAAGTGAAGCTTTTTGATGCAGACCAAACTACAATGACTGCGCTTGCTGG TTCTGGCATTGAAGTTATGGTTGCTATTCCTAATGATCAGCTTGCTGTAATGGGTGATTATAATCGTGCTAAAGATTGGGTCAAGAGGAATGTCACTCGT TATAACTTCAATGGAGGAATTACCATCAAGTATGTAGCAGTTGGTAATGAGCCTTTCCTCACATCCTATAATGGTTCATTCTTAAACACCACCTTCCCAG CACTTCGGAACATACAGAATGCCCTTAATGATGCTGGGGTAGGAGACTCCATAAAGGCCACTGTACCCTTAAATGCTGATGTCTACGGCTCGCCAGATGA CCAAGCTTATCCATCTTCTGGAAGATTCCGCAGTGATATCAATGACATTATGACCCAGATTGTTCAGTTTTTGAGTCAGAACGGAGCGCCTTTCACTGTG AACATCTATCCTTTCCTAAGTCTTTATGGGAATGATGATTTCCCATTTGATTATGCTTTCTTTGATGGGGCTCCTCAACCTGTTGTAGACAAAGGTACTG GGATTCAGTACACCAACGTTTTTGATGCCAACTTTGACACCTTGGTTTCGGCCTTGAAAGCAGCGGGGCATGGGGATATGCCCATTGTAGTAGGCGAGGT AGGCTGGCCCACAGATGGGGACAAGAATGCCAACATAGGTTATGCTATTAGATTTTACAATGGACTTATACCACGACTTGTAGGCAATAGAGGCACTCCA CTTCGGCCTGGCTACATTGAAGTATACCTGTTTGGTCTTCTTGACGAGGATGCCAAGAGCATCGCTCCTGGAAATTTTGAGCGCCATTGGGGGATCTTTC GTTATGATGGGCAGCCAAAATTTCCTCTAGATCTTTCTGGTCAGAATCAAAACAAGTTTCTTGCGGGCGCGCGGAATGTGCAATATCTTCCGGCTAAATG GTGTATGTTTAATCCAAATGCTAAGGATCTTAGCAAGCTTGCAGAGAACATAGATTATGCTTGCTCACGTTCAGACTGCACTGCACTTGGATACGGCTCT TCTTGCAACAGCTTGGACTCCAATGGGAATGCTTCATATGCTTTCAACATGTACTACCAGGTACAAAACCAGGATGAATTCGCCTGTAATTTTGAAGGCC TGGCCACGCTTACCAATCAGAATATTTCCCAAGGGAATTGCAATTTCATCATTCAGATAGTAGCTTCGTCCTCCTCCTCCCTCACCCTGTCATTGATGGC ATTTGTAACAGTATTATTAACATTCCTGTTTCTATAG
AA sequence Show only first row Show all	>Potri.013G059700.1 pacid=42812546 polypeptide=Potri.013G059700.1.p locus=Potri.013G059700 ID=Potri.013G059700.1.v4.1 annot-version=v4.1 MGTCWFLRLVLILGLLGSCVHGLGVNWGTMAIRKLSPETVVQMLKDNGILKVKLFDADQTTMTALAGSGIEVMVAIPNDQLAVMGDYNRAKDWVKRNVTR YNFNGGITIKYVAVGNEPFLTSYNGSFLNTTFPALRNIQNALNDAGVGDSIKATVPLNADVYGSPDDQAYPSSGRFRSDINDIMTQIVQFLSQNGAPFTV NIYPFLSLYGNDDFPFDYAFFDGAPQPVVDKGTGIQYTNVFDANFDTLVSALKAAGHGDMPIVVGEVGWPTDGDKNANIGYAIRFYNGLIPRLVGNRGTP LRPGYIEVYLFGLLDEDAKSIAPGNFERHWGIFRYDGQPKFPLDLSGQNQNKFLAGARNVQYLPAKWCMFNPNAKDLSKLAENIDYACSRSDCTALGYGS SCNSLDSNGNASYAFNMYYQVQNQDEFACNFEGLATLTNQNISQGNCNFIIQIVASSSSSLTLSLMAFVTVLLTFLFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64760			O-Glycosyl hydrolases family 1...		Potri.013G059700 [exp]	0	1
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.004G001300 [exp]	2.23	0.8450	CES1.1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.014G091800 [exp]	12.36	0.8380
AT4G34950			Major facilitator superfamily ...		Potri.004G173400 [exp]	17.32	0.8083
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	18.11	0.8389
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	23.91	0.8299
AT2G46140			Late embryogenesis abundant pr...		Potri.002G165000 [exp]	31.08	0.8181	PM22.2
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G172900 [exp]	31.22	0.8166
AT2G37940		ERH1, AtIPCS2	enhancing RPW8-mediated HR-lik...		Potri.006G093800 [exp]	32.52	0.7867
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G174202 [exp]	34.85	0.8221
AT3G52740			unknown protein		Potri.004G203000 [exp]	35.55	0.8231

Compare expression of checked genes

Potri.013G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.