Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18230 829 / 0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) AT1G07705 61 / 4e-09 NOT2 / NOT3 / NOT5 family (.1.2) AT5G59710 57 / 4e-08 ATVIP2, VIP2 VIRE2 interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032800 [exp] 1288 / 0 AT5G18230 846 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Potri.017G065900 [exp] 49 / 1e-05 AT1G07705 716 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2) Potri.001G349400 [exp] 48 / 4e-05 AT1G07705 765 / 0.0 NOT2 / NOT3 / NOT5 family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002632 [exp] 996 / 0 AT5G18230 974 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Lus10020262 [exp] 981 / 0 AT5G18230 977 / 0.0 transcription regulator NOT2/NOT3/NOT5 family protein (.1.2) Lus10004921 [exp] 47 / 5e-05 AT5G59710 681 / 0.0 VIRE2 interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04065 [poplar] [flax] Not3 Not1 N-terminal domain, CCR4-Not complex component PF04153 [poplar] [flax] NOT2_3_5 NOT2 / NOT3 / NOT5 family
Representative CDS sequence Show only first row Show all	>Potri.013G059800.2 pacid=42812704 polypeptide=Potri.013G059800.2.p locus=Potri.013G059800 ID=Potri.013G059800.2.v4.1 annot-version=v4.1 ATGGGAGCAAGCCGCAAGTTACAAGGCGAGATCGATCGTGTTCTAAAGAAAGTTCAAGAAGGCGTCGACGTTTTTGACAGTATCTGGAACAAGGTTTATG ATACGGACAACGTGAATCAAAAAGAAAAGTTTGAGGCAGACTTGAAGAAGGAAATCAAGAAACTGCAGAGATACAGGGACCAGATCAAAACATGGATTCA ATCCAGTGAAATAAAGGATAAGAAGGTTAGCGCATCTTACGAGCAGGCTCTGGTGGATGCTCGCAAGACTATCGAGAAAGAAATGGAAAGATTTAAGATC TGCGAAAAGGAAACTAAGACAAAAGCATTTTCCAAAGAAGGGCTGGGCCAGCAACCCAAAACTGATCCAAAGGAGAAGGCTAAATCAGAGACAAGGGATT GGTTGAATAATGTGGTTGGGGAACTGGAATCTCAGATTGATAGCTTTGAAGCTGAGATTGAGGGGCTTACTGTTAAGAAAGGAAAGACAAGGCCACCCAG ACTGACACATTTAGAGGCATCCATTACACGGCACAAGCTTCATATAAAGAAGTTAGAGTTGATCCTGAGGCTACTAGACAACGATGAGTTGAGTCCTGAG CAGGTTAATGATGTTAAAGACTTCCTGGATGACTATGTGGAACGTAATCAGGAAGATTTTGATGATTTTAGTGATGTTGATGATCTTTACAACTCATTAC CATTAGACAAGGTTGAATCTCTTGAAGACCTGGTTACAATTGGTCCTCCTGGTCTTGTGAAGGGTGCCCCCGTTCACAGCTTAAAGACTTCCTTGGTGAC ATCTGCTCCTCAAATGCCTGCCACTGTTGCTTCTACTCATCATGAGGGTGCTGTTGTTCAAGATCAAGCCGATGATACTACTTCACAGGATAGTAATTCT GATATTGTTGCAAGAACTCCTCCTGCCAAAAGTAGCATGGTTGGTTCTTCTGCTGCAGCAACACCAACTGGGAACCATGCACCTATTTCTGTGAATGTTC AGGCTCAAACATTGCATGATTTGTCAGCAGCTTCACCAACTCTTCCTGGTTCAACTTCTGTTCGAGGTGTCTTGGAAAATGCAGCTCCTTCTAATCCTTC TTCTCCCGCAACACTTGGCAATTCTATGAAGGAGGAAGAAATTGCAGGCTTCCCTGGCCGTAGATCATCACCTTCTCTTGCTGATGCTGGATTAGCAAGG GGCATTGGTAGAGGTGGCCTCTCTAGCCAGCCCTCGTCTAGTATCCCCCTCAGTCCTGTTGTTATTCCTAGCAACGGGGCTCATGGTTCAGTACCTTTAG CTTCTGACATTGCAAAGAGAAATATTTTGGGAAATGATGATAGAATTGGGAGTGCTGGAATGGTGCAGCCTCTGGCTTCCCCACTAAGTAACCGAATGAT CTTGCCTCAGGCTGGTGATGGAACCAGTGCAGTTGATACTAGTAGTGCTGGTGAAGCTGCTACTATGGGTGGCAGAGTTTTCTCTCCTTTGGTCACTGGC ATGCAATGGAGACCTGGGAGTTCCTTTCAAAATCAGAATGAACCGGGCCAATTTCGTGCAAGAACTGAAATAGCTCCTGATCAGAGAGAGAAATTTTTGC AGCGTCTTCAGCAAGTCCAGCAGCAAGGTCACAGTAACATTCTTGGCATGCCGCCTCTTACTGGTGGGAATCATAAGCAGTATTCTGCCCAACAAAACCC CCTTTTGCAGCAGTTTAATTCTCAAAGTTCATCTGTCTCTCAAGCTAGTTTAGGACTTGGAGTGCAGGCATCAGGTTTCAATACTGTTACATCTGCTGCT TTACAGCAGCCAAATTCCATCCATCAGCAGTCTAGTCAGCAAGTTGTGATGTCAAGTGGTGCAAAAGATGCTGAACTTGGCCATTCAACAGTTGATGAGC AGCAGCTAAAGCAGAATTTACCTGAGGATTCAACCACCAAATCTGCTCTTACATCTGGGCTTGGAAAAAGTCTTGTGAATGAGGATGAACTCACATCTCC ATATGCAATGGATACTTCTGCTGGGGCATCTGGTTCCTTGACAGAGCCTTTACAAGTGCCAAGAGATATTGATCTCTCTCCAGGGCAACTCCTACAATCC AGTCAACCATCTAGTGGCCTAGGTGTTATTGGCCGGAGAAGTGTTTCGGACCTTGGTGCCATTGGCGATAATCTCACTGGATCTGCTGTAAATTCTGGGG CAATGCACAATCAGTTATACAATTTACAGATGCTTGAGGCTGCATATCACAAGCTTCCTCAACCTAAAGACTCAGAACGAGCTAGGAGCTATATTCCAAG GCACCCGGCAGCCACCCCTCCTAGCTATCCTCAAGTTCAGTTACCAATGGCAAGTAACCCTGCATTCTGGGAACGACTAAGCATGCATAGTTATGGAACT GATACCTTGTTCTTTGCTTTTTACTATCAACAGAATACCTATCAGCAGTATCTGGCTGCGAAAGAGCTAAAGAAGCAATCTTGGAGATACCACAGAAAAT ACAACACCTGGTTTCAACGGCATGAGGAGCCAAAAGTTACCACTGATGAATATGAACAGGGGACATATGTGTATTTTGATTTCCATGTTGGCAATGAGGA CAAACAAGGATGGTGTCAAAGAATCAAGACAGAGTTCACTTTTGAGTATAACTATCTTGAAGATGAACTCATTGTCTAG
AA sequence Show only first row Show all	>Potri.013G059800.2 pacid=42812704 polypeptide=Potri.013G059800.2.p locus=Potri.013G059800 ID=Potri.013G059800.2.v4.1 annot-version=v4.1 MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKTIEKEMERFKI CEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLTVKKGKTRPPRLTHLEASITRHKLHIKKLELILRLLDNDELSPE QVNDVKDFLDDYVERNQEDFDDFSDVDDLYNSLPLDKVESLEDLVTIGPPGLVKGAPVHSLKTSLVTSAPQMPATVASTHHEGAVVQDQADDTTSQDSNS DIVARTPPAKSSMVGSSAAATPTGNHAPISVNVQAQTLHDLSAASPTLPGSTSVRGVLENAAPSNPSSPATLGNSMKEEEIAGFPGRRSSPSLADAGLAR GIGRGGLSSQPSSSIPLSPVVIPSNGAHGSVPLASDIAKRNILGNDDRIGSAGMVQPLASPLSNRMILPQAGDGTSAVDTSSAGEAATMGGRVFSPLVTG MQWRPGSSFQNQNEPGQFRARTEIAPDQREKFLQRLQQVQQQGHSNILGMPPLTGGNHKQYSAQQNPLLQQFNSQSSSVSQASLGLGVQASGFNTVTSAA LQQPNSIHQQSSQQVVMSSGAKDAELGHSTVDEQQLKQNLPEDSTTKSALTSGLGKSLVNEDELTSPYAMDTSAGASGSLTEPLQVPRDIDLSPGQLLQS SQPSSGLGVIGRRSVSDLGAIGDNLTGSAVNSGAMHNQLYNLQMLEAAYHKLPQPKDSERARSYIPRHPAATPPSYPQVQLPMASNPAFWERLSMHSYGT DTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVTTDEYEQGTYVYFDFHVGNEDKQGWCQRIKTEFTFEYNYLEDELIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18230			transcription regulator NOT2/N...		Potri.013G059800 [exp]	0	1
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	5.47	0.8711
AT1G31730			Adaptin family protein (.1)		Potri.004G235200 [exp]	8.12	0.8040
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.012G098800 [exp]	8.48	0.8324
AT5G52280			Myosin heavy chain-related pro...		Potri.015G143800 [exp]	13.19	0.8419
AT1G20970			unknown protein		Potri.006G191500 [exp]	18.02	0.8212
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	18.33	0.8572
					Potri.016G091300 [exp]	18.89	0.8418
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.001G294400 [exp]	19.89	0.7838
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	20.56	0.8244
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.008G077800 [exp]	21.90	0.8185

Compare expression of checked genes

Potri.013G059800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.