Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 333 / 1e-101 lectin protein kinase family protein (.1) AT5G60900 323 / 8e-99 RLK1 receptor-like protein kinase 1 (.1) AT4G00340 318 / 3e-96 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 314 / 1e-94 S-locus lectin protein kinase family protein (.1) AT4G32300 293 / 4e-87 SD2-5 S-domain-2 5 (.1) AT4G21380 290 / 8e-86 ARK3 receptor kinase 3 (.1) AT1G11340 283 / 9e-83 S-locus lectin protein kinase family protein (.1) AT1G65790 277 / 8e-81 ARK1 receptor kinase 1 (.1) AT5G35370 265 / 2e-76 S-locus lectin protein kinase family protein (.1) AT5G24080 255 / 2e-76 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060000 [exp] 889 / 0 AT5G60900 400 / 3e-128 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 584 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 575 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 572 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 571 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 568 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 568 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 566 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 562 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036639 [exp] 1048 / 0 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 728 / 0 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 532 / 5e-178 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 508 / 5e-169 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 504 / 3e-167 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 496 / 9e-164 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 477 / 1e-156 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 432 / 2e-139 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 371 / 1e-122 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 355 / 6e-110 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.013G059900.1 pacid=42812593 polypeptide=Potri.013G059900.1.p locus=Potri.013G059900 ID=Potri.013G059900.1.v4.1 annot-version=v4.1 ATGGTTTTCTGGCCTACTGATTCTGTTTTCTCAGTAACAATGGTTTCTATTGTTTTATGGTGTCTTCCATTTGTTCTTTCCTTTCTTTGTTCTTTAGCGC AACCCCAGATAACCACTAACACAATAAACTTGGGTGCCAGCATCACTGCTGGGACTAATTCTTCGTGGCGATCACCCTCTGGTGATTTTGCTTTTGGGTT CTATCCTCTTCTTAATGGCATGTTCCTTGTTGGAATCTGGTTTGACAAAATCCCAGAAAGAACACTAGTTTGGTCAGCGAACCGTGATGATCCAGCTCGA ACTGGATCAACCATCAATTTCACACTCGATGGCCAGCTTGTTCTTACACACTCAAATGGAACTGGATACTTAATATACAATGGAACTTTCGGTGCTAGTT CTGCTCTGATGCAAAATGATGGCAATTTTGTTGTAAAAACCAATTCTTCCGAAGTTATCTGGCAAAGCTTTGATTCTCCAACAAACACCATTTTATTAGG CCAGGTCCTAGTAATGGGCAAAAAACTCTACTCTAATGCAAATGGAACAGTTGACTACTCGACTGGGCAGTACATGTTAGAGCTTCAAATGGATGGTAAT GTTGTTATGTCTGCATACAAGTTCGCTGATCCTGGTTACTGGTTCACTTTGACAGAAGGAAACCAAAATGTGAGCCTGATTTTCAACCAGAGTACAGCTT TTATGTATGTTGTGAATCACACTTCAATTACGTATCGTATGACAAGTCAAGTTCCCACTCCGATTGGAGATTACTATCACCGAGCAACGATCAATGACCA TGGAAATCTTCAACAGTTTGTTTACCACAAAGAAAATGGAAGCGGGTGGACCGTTGTGTGGGAGCCAGAGAGTATTAAAGCTGAACCTTGCATACCGTTT AATATCTGTGGAGTTTATGGCTTCTGCACTTCGATTGATAACACAACAATCAACTGTGATTGTTTGCCTGGCTACTCACCATGGGATCCAAGCATTCCCT CAAAAGGATGCTATCCTGATACGGTGATAGATTTCTGTGCTCCGAATTCTTCGGCTTCAAATTTCACTCTTGAAGAGATAGATAATGCTGATTTTCCAAA CGGTGCATTTGCAGATATGGCCAGAGTCACACCAGCCGATGTAGAAGAATGCAGGAAGGCGATAATGGACGACTGTTTTGCTGTGGCTGGCGTCTTGGTC GAGTCTGTGTGTTACAAGAAGAGAACGCCTTTGCTTAATGCTAGAAGGAGCATCCCTTCTACTAATAATATAGTGGCGTTTATAAAAATTCCCAAGGCAA ACAACAACAATCAAATTCAAGACAAAGATGATGATTCTCCTTCTTGGATTGCTCTTCTAGCAGGCTTATTATTATGTTCAATAATGACGTTACTCTTTGC CACCATTTCCATTTATCATCACCCTCTTGCTCAGCCTTACATTAGTAAAAAGCAGCTCCCAGTGCCAAAGCCTGTAGAGATCAATTTGAAGGCATTTTCA TTCCAGGAATTGCTTCAAGCAACGAATGGTTTAAGGAACAAACTTGGGAGAGGTGCTTTCGGAACTGTCTATAGTGGGGTGTTAACCTTGGAGGCTGAAG AGGTTGAGATTGCTGTCAAGAAGCTTGAAAAGGTCATTGAACAAGGTGAGAAGGAATTCTTAACAGAAGTCCAAGTAATTGGACTAACTCACCACAAGAA TCTTGTAAGGCTGGTGGGTTTTTGTAATGAGAAAAATCACCGGCTTTTAGTTTATGAGCTAGTGAAGAATGGTACGTTATCGGATTTTCTGTTTGGAGAG GAGAGGAGGCCCAGTTGGGATCAAAGGGCTGAAACTGTGTATGGAATTGCAAGAGGTTTACTGTACTTGCATGAAGAGTGTGAGACGCAGATCATTCATT GTGACATAAAGCCGCAAAATGTTCTTCTTGACAAAAATTACACAGCCAAGATAGCTGATTTTGGCCTAGCAAAGCTCTTGAAAAAAGACCAGACTCGAAC GAGCACCAAAGTTAGAGGAACAATGGGATACATGGCACCTGAATGGCTAAAAAATGCTCCTGTGACTACCAAAGTTGATGTTTACAGCTTTGGGGTCGTG TTGCTGGAGATTATTTTTTGTAGAAAGCACATAGAGTTGCATCAAGTTAATGAATCAACAGAGGATAACGAGATGATTCTAATTGACTGGGTTCTATGCA ATGTGAGAGCTGGTAACTTACACGCCATTGTCAGCCATGATTCTGAAGTCCTGGAAGATTTTTGCAGGTTTGAAAGAATGGTCTTGGTGGGTTTATGGTG CATATGTCCTAACCCAACTCTTCGACCATCAATGAACAAGGTTACACAGATGCTGGAAGGAACTAGTGAAGTTGATGATCCCCCTTTGATCGATGCACAG ATTTTTTAA
AA sequence Show only first row Show all	>Potri.013G059900.1 pacid=42812593 polypeptide=Potri.013G059900.1.p locus=Potri.013G059900 ID=Potri.013G059900.1.v4.1 annot-version=v4.1 MVFWPTDSVFSVTMVSIVLWCLPFVLSFLCSLAQPQITTNTINLGASITAGTNSSWRSPSGDFAFGFYPLLNGMFLVGIWFDKIPERTLVWSANRDDPAR TGSTINFTLDGQLVLTHSNGTGYLIYNGTFGASSALMQNDGNFVVKTNSSEVIWQSFDSPTNTILLGQVLVMGKKLYSNANGTVDYSTGQYMLELQMDGN VVMSAYKFADPGYWFTLTEGNQNVSLIFNQSTAFMYVVNHTSITYRMTSQVPTPIGDYYHRATINDHGNLQQFVYHKENGSGWTVVWEPESIKAEPCIPF NICGVYGFCTSIDNTTINCDCLPGYSPWDPSIPSKGCYPDTVIDFCAPNSSASNFTLEEIDNADFPNGAFADMARVTPADVEECRKAIMDDCFAVAGVLV ESVCYKKRTPLLNARRSIPSTNNIVAFIKIPKANNNNQIQDKDDDSPSWIALLAGLLLCSIMTLLFATISIYHHPLAQPYISKKQLPVPKPVEINLKAFS FQELLQATNGLRNKLGRGAFGTVYSGVLTLEAEEVEIAVKKLEKVIEQGEKEFLTEVQVIGLTHHKNLVRLVGFCNEKNHRLLVYELVKNGTLSDFLFGE ERRPSWDQRAETVYGIARGLLYLHEECETQIIHCDIKPQNVLLDKNYTAKIADFGLAKLLKKDQTRTSTKVRGTMGYMAPEWLKNAPVTTKVDVYSFGVV LLEIIFCRKHIELHQVNESTEDNEMILIDWVLCNVRAGNLHAIVSHDSEVLEDFCRFERMVLVGLWCICPNPTLRPSMNKVTQMLEGTSEVDDPPLIDAQ IF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.013G059900 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	12.32	0.8409
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	15.71	0.8554
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003101 [exp]	60.44	0.8025
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	61.96	0.8111
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	78.46	0.7934
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	151.47	0.7281
AT1G75800			Pathogenesis-related thaumatin...		Potri.004G014574 [exp]	182.11	0.7359
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	192.52	0.7313
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G118035 [exp]	225.53	0.7155
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Potri.001G303700 [exp]	229.74	0.7358

Compare expression of checked genes

Potri.013G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.