Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 400 / 3e-128 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 307 / 3e-92 lectin protein kinase family protein (.1) AT4G00340 303 / 8e-91 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 292 / 1e-86 S-locus lectin protein kinase family protein (.1) AT4G21380 261 / 2e-75 ARK3 receptor kinase 3 (.1) AT1G11340 254 / 2e-72 S-locus lectin protein kinase family protein (.1) AT1G11280 252 / 3e-72 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61420 248 / 6e-71 S-locus lectin protein kinase family protein (.1) AT4G32300 248 / 1e-70 SD2-5 S-domain-2 5 (.1) AT5G24080 236 / 3e-69 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G059900 [exp] 882 / 0 AT1G34300 333 / 9e-102 lectin protein kinase family protein (.1) Potri.T085100 [exp] 549 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 547 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 545 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 543 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 542 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085000 [exp] 540 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 535 / 9e-180 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 532 / 3e-178 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042940 [exp] 938 / 0 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 736 / 0 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 486 / 1e-160 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 485 / 3e-160 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 481 / 9e-159 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 468 / 2e-153 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 457 / 4e-149 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10032438 [exp] 409 / 2e-137 AT5G60900 285 / 2e-90 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 420 / 4e-135 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 345 / 9e-107 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.013G060000.1 pacid=42811074 polypeptide=Potri.013G060000.1.p locus=Potri.013G060000 ID=Potri.013G060000.1.v4.1 annot-version=v4.1 ATGACTATCCAGAAAATACTTCCTTTTCTTCTACTGCAGTTCCTGTACTTCCATGAATTGCATGCTCAGATACCTCCCAACATAAGCTTGGGTTCTAGCA TCAAGGCTGGATCTGGTAATTCTTGGCGATCACTTTCTGATGAATTTGCGTTCGGGTTCTACTCTCTGCCCAACAATCTTTACCTTGTTGGAATTTGGTT TAACAAGATCCCTGAAAAAACACTAGTCTGGTCAGCTAATCGTGACTCTCCGGCAGCTGCCGGATCCACAGTCAGACTCACGTTTGACGGCCAGCTTACG CTCACACATCTCAATGGTAGTATTCAATCAATATACAGGGGGAGAAGAGCAGGTTTAGGCTTCATGCTAAATGATGGCAACTTTGTCTTGAGAGATGACA GTTCAAGTGTCATCTGGCAGAGTTTTAATTCACCAACAGACACAATCTTACCAGGTCAAGTTCTTAGTGATGACCAAAAGCTCTATTCCAATGCGAATGG AACTGTTGATTACTCCACTGGGAATTTCATGTTGCAGATGCAATTTGATGGAAACCTTGTGCTCTCTGCCTATCACTTCTCTGATCCTGGTTATTGGTAC ACTGGAACTGTACGAAACAATGTTAGTTTGGTGTTCAGTAATCATACTTTTTTCATGTACCTTGTCAACAGTACTGGTGATAATATCTACCCTTTAACAA GAAATGTCTCAACCCCCGTTGGAGACTACTATCACCGAGCAACAATTAATGATCATGGTGATTTCCAACAATTCGCTTACCATAAATCAAATAGCAGTGG ATGGACAAGAGTGTGGAGGGCGATCGACGAGCCTTGCGTGGTGAATGCTATATGTGGTGTCTATGGTATGTGTTTTTCTCTGAATAATGAGACAGCAACA TGTAAGTGCATACCAGGTTACATTCCATTGGACCCTAATCACGTGTCCAAAGGGTGTCGCCCAGAGACCGTGGTGAACTACTGTGCCGACCCTTCAATGA GAAATTTCACAATTAATGTGATTGATGATGCAGACTTCCCATTTGAGAGCGATGCAGACTTGGCTCGAGTGAAGAATGTCGATCTGGAGGGATGCAAAAA AGCTCTTATGGATGATTGTTACAGCTTGTCTGCTTCCTTGGTGGATTCTAGATGTATCAAGAAAAGGATGCCTTTACTAAATGCGAGAAAGAGTTTTTCT ACTAAAGGACGCCAAGCGCTGGTGAAGGTGCCGATGAAAAGCAATCCTGGCATTCAAGAACATAAAAAGAATAATGATTTTGACACTCGGGTTTTTCTAA AGATTAGCCTTATAGTTACAGCCACGCTTGCTTTCTGTTTTGGAGTTTCTGCCATCTATTACCATCCTGCTCCTCGAAGATTTATCAAAAGGAAACGCTA TTCAAATGCTAATTCCATTGGCATAAACTTTCAGGAGTTCAAGTACCTGGAACTACAGAAGGCCACAAATGGATTCAGCAAGACCCTGGGTAGAGGATCT TCTGCTAAAGTTTACAGTGGGATTCTAAGCATGAAGGACATACAGATTGATATTGCTGTAAAAGTGCTGACGAAATCGATTGAAAAAGGCGAGAAGGAAT TCATGACAGAGCTCAAAATAATAGGCCGGACATACCACAAGAATTTGGTAAGACTGTTGGGCTTTTGTGTTGAGAACGATCAACAGCTTCTGGTCTATGA GTTAATGGCAAATGGCTCGCTTGCCAATCTTCTATTCGGGAAGGGATCAGAAAGACCTAACTGGGTTCGGAGGGCAGAAATGGTGCTTGAAATAGCTAGA GGATTGCTCTACTTGCATGACGAATGCGAGGCACAGATTATCCATTGTGACATCAAGCCTGAGAATGTACTGATTGATAACAATTACACTGCTAAGCTTG CAGATTTTGGCCTTTCCAAGCTTCTGAATAAAGATCAAACTAGAACAGACACAAATTTAAGAGGCACAGTGGGGTATCTGGCACCAGAATGGATAAGGAA TGAACGAGTGACATCCAAAGTAGATGTTTACAGCTTTGGTGTGATGTTACTTGAAATTCTATGTTGCAGAAGGCATATAGAACCGAGCCGGGTTGAGGAA GAGAGTGAAGAGGATGATCTTGTTCTCTCGGACTGGGTTATAAGTTGCATGGCCGCCGGGAAGCTAGGGACGGTGGTAGGACATGACCCTGAAGTATTAA GTGATTTCAAGAGATTCGAGAGAATGACCTTAGTGGGTTTATGGTGCATTCATCCTGATGCAATGTCCAGACCTTCTATGAAAAAGGTAACACAGATGTT AGAGGGAACCTCGGAAATCGGAATCCCGCCTTCACTTTCCGATCAAATGTCAGTGAGTAATTAA
AA sequence Show only first row Show all	>Potri.013G060000.1 pacid=42811074 polypeptide=Potri.013G060000.1.p locus=Potri.013G060000 ID=Potri.013G060000.1.v4.1 annot-version=v4.1 MTIQKILPFLLLQFLYFHELHAQIPPNISLGSSIKAGSGNSWRSLSDEFAFGFYSLPNNLYLVGIWFNKIPEKTLVWSANRDSPAAAGSTVRLTFDGQLT LTHLNGSIQSIYRGRRAGLGFMLNDGNFVLRDDSSSVIWQSFNSPTDTILPGQVLSDDQKLYSNANGTVDYSTGNFMLQMQFDGNLVLSAYHFSDPGYWY TGTVRNNVSLVFSNHTFFMYLVNSTGDNIYPLTRNVSTPVGDYYHRATINDHGDFQQFAYHKSNSSGWTRVWRAIDEPCVVNAICGVYGMCFSLNNETAT CKCIPGYIPLDPNHVSKGCRPETVVNYCADPSMRNFTINVIDDADFPFESDADLARVKNVDLEGCKKALMDDCYSLSASLVDSRCIKKRMPLLNARKSFS TKGRQALVKVPMKSNPGIQEHKKNNDFDTRVFLKISLIVTATLAFCFGVSAIYYHPAPRRFIKRKRYSNANSIGINFQEFKYLELQKATNGFSKTLGRGS SAKVYSGILSMKDIQIDIAVKVLTKSIEKGEKEFMTELKIIGRTYHKNLVRLLGFCVENDQQLLVYELMANGSLANLLFGKGSERPNWVRRAEMVLEIAR GLLYLHDECEAQIIHCDIKPENVLIDNNYTAKLADFGLSKLLNKDQTRTDTNLRGTVGYLAPEWIRNERVTSKVDVYSFGVMLLEILCCRRHIEPSRVEE ESEEDDLVLSDWVISCMAAGKLGTVVGHDPEVLSDFKRFERMTLVGLWCIHPDAMSRPSMKKVTQMLEGTSEIGIPPSLSDQMSVSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.013G060000 [exp]	0	1
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	3.74	0.8290
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.002G049500 [exp]	5.09	0.7469	Pt-SULTR3.2
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.016G039051 [exp]	6.48	0.8000
AT5G38760			Late embryogenesis abundant pr...		Potri.017G108300 [exp]	6.92	0.7948
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.009G031900 [exp]	7.00	0.7802
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	11.83	0.7538	GA2ox6,GA2.8
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	13.41	0.7663
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180700 [exp]	14.28	0.7345	RCOMT1.2
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	16.00	0.7705
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	17.86	0.7611

Compare expression of checked genes

Potri.013G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.