Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56360 227 / 6e-71 PSL4 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001700 [exp] 238 / 5e-75 AT5G56360 539 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Potri.003G223000 [exp] 236 / 2e-74 AT5G56360 587 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013398 [exp] 239 / 2e-75 AT5G56360 611 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10010326 [exp] 238 / 6e-75 AT5G56360 604 / 0.0 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1) Lus10026874 [exp] 237 / 9e-75 AT5G56360 236 / 1e-68 PRIORITY IN SWEET LIFE 4, calmodulin-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0226 [poplar] [flax] M6PR PF13015 [poplar] [flax] PRKCSH_1 Glucosidase II beta subunit-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G060332.1 pacid=42812560 polypeptide=Potri.013G060332.1.p locus=Potri.013G060332 ID=Potri.013G060332.1.v4.1 annot-version=v4.1 ATGGAGGCAACAATGAGATTCCAGAGGGCACTGATGACAAGGACCATGACAATAGTGATGATACAGGATGCTGCTCAAAACCTGTTTCAGGCGATTAATT TGTTTCCTGCTCCACTAGATAAACTAGATGCAAATCGTGTTCGGAAGGATTATGAGGACTCCACTACAAGGTTGTCTGATATACAGGAAAGAATAGCAAG TTTGACAGAGAAGTTAAAACACGACTTTGGCATGGAGAAGGAGTTCTATTTCTACTACGATCAATGTTTTGAAACCAAACAGGACAAGTACGTGTATAAA GTTTGCCCATTTAAAGATGCATCCCAGGAGGAGGGCTATCACATAACTCAACTAGGGCAATGGGAGAAATTTGAAAACTCATATGGCTCCATGCTGTTTT CAAATGGTGATGGATGCTGGAATGGACCTGATAGAAGTTTAAAGGTCAAGCTTAGATGTGGACTGAACACAGAACTGACCGATGTGAAAGAACCAAGCCG CTGCGAATATGTAGCTCTGATGTCGACCCCTATCCGTTGCCTAGAAGGAAAGCTTGAGGAACTTGAGCGTAAACTTGAATCAATGTACAATGAACAACTG CAAGGTGGCCATGATGAGCTGTAA
AA sequence Show only first row Show all	>Potri.013G060332.1 pacid=42812560 polypeptide=Potri.013G060332.1.p locus=Potri.013G060332 ID=Potri.013G060332.1.v4.1 annot-version=v4.1 MEATMRFQRALMTRTMTIVMIQDAAQNLFQAINLFPAPLDKLDANRVRKDYEDSTTRLSDIQERIASLTEKLKHDFGMEKEFYFYYDQCFETKQDKYVYK VCPFKDASQEEGYHITQLGQWEKFENSYGSMLFSNGDGCWNGPDRSLKVKLRCGLNTELTDVKEPSRCEYVALMSTPIRCLEGKLEELERKLESMYNEQL QGGHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060332 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211866 [exp]	5.47	0.8211
AT1G70500			Pectin lyase-like superfamily ...		Potri.015G088600 [exp]	9.48	0.8211
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.002G201800 [exp]	10.19	0.7799
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.016G135900 [exp]	10.24	0.8211
					Potri.001G426850 [exp]	13.07	0.7756
AT1G64870			unknown protein		Potri.014G054900 [exp]	14.45	0.7340
AT5G61620	MYB		myb-like transcription factor ...		Potri.001G080300 [exp]	15.81	0.7581
AT2G32990		ATGH9B8	glycosyl hydrolase 9B8 (.1)		Potri.001G356000 [exp]	15.96	0.6567
AT5G27660			Trypsin family protein with PD...		Potri.018G001550 [exp]	25.69	0.7111
AT5G44265			Bifunctional inhibitor/lipid-t...		Potri.017G013200 [exp]	39.49	0.5796

Compare expression of checked genes

Potri.013G060332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.