Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55530 207 / 3e-64 RING/U-box superfamily protein (.1) AT3G13430 177 / 6e-53 RING/U-box superfamily protein (.1.2.3) AT5G56340 176 / 1e-51 ATCRT1 RING/U-box superfamily protein (.1) AT3G19950 149 / 5e-42 RING/U-box superfamily protein (.1) AT4G26400 145 / 2e-40 RING/U-box superfamily protein (.1.2) AT2G40830 105 / 1e-25 RHC1A RING-H2 finger C1A (.1.2.3) AT3G46620 104 / 6e-25 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G26800 100 / 7e-25 RING/U-box superfamily protein (.1) AT3G56580 99 / 2e-23 RING/U-box superfamily protein (.1.2.3) AT5G59550 99 / 6e-23 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032500 [exp] 450 / 8e-159 AT5G56340 177 / 1e-51 RING/U-box superfamily protein (.1) Potri.001G001500 [exp] 191 / 1e-57 AT5G56340 323 / 2e-108 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 186 / 2e-55 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 137 / 3e-37 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 129 / 2e-34 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.005G090500 [exp] 128 / 2e-34 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 128 / 2e-34 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 103 / 4e-26 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 102 / 2e-24 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002637 [exp] 259 / 2e-83 AT1G55530 257 / 4e-82 RING/U-box superfamily protein (.1) Lus10020258 [exp] 258 / 6e-80 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10013397 [exp] 172 / 3e-50 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10010179 [exp] 141 / 1e-39 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10031422 [exp] 102 / 1e-24 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10030755 [exp] 98 / 4e-23 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 97 / 6e-23 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10025612 [exp] 98 / 7e-23 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10028063 [exp] 98 / 1e-22 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10017383 [exp] 91 / 1e-22 AT3G19950 127 / 8e-37 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF14369 [poplar] [flax] zinc_ribbon_9 zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.013G060500.3 pacid=42810748 polypeptide=Potri.013G060500.3.p locus=Potri.013G060500 ID=Potri.013G060500.3.v4.1 annot-version=v4.1 ATGGAAGATGAAATGGTGGATCAGTATTGGTGTCACATGTGTTCTCAGATGGTGAACCCGGTAACGGAAGCTGAGATTAAATGCCCATTCTGTGAGAGTG GTTTTCTGGAAGAGATGGGCAGCGTGAGAGAAGTCAATAACAATATCTTTGATTTAGGATCAGAACATGCATTCTCTCTTTGGGATACATTCTTGCTGGA CCTTATGGGTGGCTTAGGCACTTCTGGTTCACGTAGAATAGCTCAAGAACATATTAGCAGTACCAGTTCCCAAGATGAAGATGATGAGCTAGACTTTGAG TCCTTACTTCGAAGAAGAGGTAGACTAAGCACATCTTCAGTCCAACGCTTACTTCAAGATCTTCATTTGAGGTCAGAGAATCCTGAAAATGACAGGGAGA GCAGCGGCGGCAGTAGTAGTAGCAGTAGTGTGATTTTGGTCAATCCTTTCAATGAAGAGGCAATAATTCTTCACAGTCCTGATAATATGAACCAACCAGA AAACCCGAGTCAAAACGTGTCAATTTCTTTCCAGGACTATCTTATAGGACCTGATGTGGATTTATTGCTACATCATTTGGCAGAGAGTGGTCCTAACCGA TACGGGACTCCTCCAGCAGAGAAAGAAGCAGTTAAAGCAATGCCAACAGTTTCCATTACGCAGAATTTGCAGTGTTCAGTATGCTTGGAAGAGTTCGACA TTGGATGTGAAGCAAAGGAGATGCCATGTAAACACAAATTTCATGGAGAGTGTATTGTTCCATGGCTGGAACTTCATAGTTCCTGCCCAGTTTGCAGGTT CCTAATGCCCTCTGATGATTCCACGACTGGAGTAAGCCAGTCGAGAAGTGACGAAGAGAGAACGGAGAGCAATGATGCTAGGATCATTAATAATGGGAGA AGGTATTGGGTCCCTATCCCATGGCCTTTTGATGGTTTGTTTCCTTTATCAGGATCTCAAAATGGTGGGAGTTCTTCATCAGCACCATCATCAACCACCA TGCGCGGAAGTGCTTCCTACTCCGATGAAACTTGA
AA sequence Show only first row Show all	>Potri.013G060500.3 pacid=42810748 polypeptide=Potri.013G060500.3.p locus=Potri.013G060500 ID=Potri.013G060500.3.v4.1 annot-version=v4.1 MEDEMVDQYWCHMCSQMVNPVTEAEIKCPFCESGFLEEMGSVREVNNNIFDLGSEHAFSLWDTFLLDLMGGLGTSGSRRIAQEHISSTSSQDEDDELDFE SLLRRRGRLSTSSVQRLLQDLHLRSENPENDRESSGGSSSSSSVILVNPFNEEAIILHSPDNMNQPENPSQNVSISFQDYLIGPDVDLLLHHLAESGPNR YGTPPAEKEAVKAMPTVSITQNLQCSVCLEEFDIGCEAKEMPCKHKFHGECIVPWLELHSSCPVCRFLMPSDDSTTGVSQSRSDEERTESNDARIINNGR RYWVPIPWPFDGLFPLSGSQNGGSSSSAPSSTTMRGSASYSDET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55530			RING/U-box superfamily protein...		Potri.013G060500 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Potri.003G114100 [exp]	4.00	0.8957	MYB85.1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	4.00	0.9023
					Potri.005G211000 [exp]	4.24	0.8893
AT3G51780		ATBAG4	BCL-2-associated athanogene 4 ...		Potri.009G074300 [exp]	5.09	0.9017
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	7.07	0.8954
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155200 [exp]	8.66	0.8984
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Potri.005G209800 [exp]	9.48	0.8294
AT3G03770			Leucine-rich repeat protein ki...		Potri.013G064300 [exp]	9.94	0.8818
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.012G043900 [exp]	10.24	0.8613	NCPGS.6
AT3G07510			unknown protein		Potri.002G239500 [exp]	11.40	0.8778

Compare expression of checked genes

Potri.013G060500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.