Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXP2.5,PtrEXPA11
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03090 356 / 1e-125 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 351 / 8e-124 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT1G26770 343 / 2e-120 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) AT5G56320 342 / 4e-120 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G40610 331 / 1e-115 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT3G29030 325 / 4e-113 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G02260 318 / 1e-110 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 318 / 2e-110 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G05290 309 / 5e-107 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT3G55500 308 / 1e-106 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G001100 [exp] 379 / 2e-134 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.017G085300 [exp] 364 / 4e-129 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2) Potri.008G088300 [exp] 364 / 8e-129 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.004G123200 [exp] 358 / 1e-126 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 353 / 4e-124 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.019G057500 [exp] 338 / 2e-118 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.016G135200 [exp] 333 / 2e-116 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 333 / 2e-116 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.013G154700 [exp] 325 / 4e-113 AT2G40610 348 / 2e-122 expansin A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036763 [exp] 366 / 1e-129 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10037164 [exp] 357 / 7e-126 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10026614 [exp] 352 / 5e-124 AT1G69530 431 / 7e-155 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10042214 [exp] 335 / 6e-117 AT2G40610 393 / 7e-140 expansin A8 (.1) Lus10008603 [exp] 333 / 2e-116 AT2G40610 397 / 2e-141 expansin A8 (.1) Lus10034227 [exp] 332 / 6e-116 AT2G40610 416 / 7e-149 expansin A8 (.1) Lus10033011 [exp] 323 / 1e-112 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) Lus10009917 [exp] 320 / 3e-111 AT2G40610 395 / 9e-141 expansin A8 (.1) Lus10029038 [exp] 315 / 2e-109 AT2G40610 418 / 6e-150 expansin A8 (.1) Lus10040286 [exp] 309 / 1e-106 AT2G39700 447 / 4e-161 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.013G060800.1 pacid=42812321 polypeptide=Potri.013G060800.1.p locus=Potri.013G060800 ID=Potri.013G060800.1.v4.1 annot-version=v4.1 ATGGATTTTCTTGGAGTTTGTCTCGTAGTCTTCCTAACCATGTCCAAAACAATTCATGGCTATGGAGGTGGATGGTCTGATGCTCATGCTACCTTCTATG GAGGTGGTGATGCTTCTGGCACAATGGGAGGAGCTTGTGGTTATGGAAACCTCTACAGCCAAGGTTATGGGACAAACACGGCAGCATTAAGCACGGCTTT ATTCAAGAATGGACTAACCTGTGGAGCTTGTTTCGAACTCAAATGTGTAAATGATGCCAGGTGGTGTCTCTCAGGTTCTATCATAGTCACAGCAACAAAT TTTTGCCCTCCAAACAGTGCAGGAGGGTGGTGCAATCCTCCTTCGCAACACTTCGATCTTTCTCAGCCTGTTTTTCAACATCTAGCTCGTTACAAAGCAG GAATAGTCCCTGTTCTATACAGAAGAGTTGCTTGTAGGAAAACTGGAGGAATCAGGTTCACTATAAATGGTCATTCATACTTCAACCTTGTCCTTATAAC CAATGTTGGTGGTGCTGGTGATGTTGTGTCAGTCTCCATCAAAGGATCTAGAACTGGTTGGCAGCCAATGTCTCGCAATTGGGGCCAAAATTGGCAGAGC AATTCTTACCTGAATGGTCAAGCACTCTCTTTCAAGGTCACAACAAGTGATGGACGATCTATCATCTCCAGCAATGTGGCTCCTCCAAACTGGGCTTTTG GTCAAACCTTCCATGGAGGGCAGTTCTAA
AA sequence Show only first row Show all	>Potri.013G060800.1 pacid=42812321 polypeptide=Potri.013G060800.1.p locus=Potri.013G060800 ID=Potri.013G060800.1.v4.1 annot-version=v4.1 MDFLGVCLVVFLTMSKTIHGYGGGWSDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFKNGLTCGACFELKCVNDARWCLSGSIIVTATN FCPPNSAGGWCNPPSQHFDLSQPVFQHLARYKAGIVPVLYRRVACRKTGGIRFTINGHSYFNLVLITNVGGAGDVVSVSIKGSRTGWQPMSRNWGQNWQS NSYLNGQALSFKVTTSDGRSIISSNVAPPNWAFGQTFHGGQF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Potri.013G060800 [exp]	0	1	Pt-EXP2.5,PtrEXPA11
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	2.44	0.9377
AT3G06070			unknown protein		Potri.008G204100 [exp]	3.87	0.8963
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	6.78	0.9087
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Potri.004G216500 [exp]	10.67	0.9004
AT5G49800			Polyketide cyclase/dehydrase a...		Potri.004G231000 [exp]	12.00	0.8360
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	13.56	0.8976
AT5G48270			Plant protein of unknown funct...		Potri.010G047700 [exp]	14.49	0.8908
					Potri.002G252400 [exp]	16.09	0.8896
AT3G10600		CAT7	cationic amino acid transporte...		Potri.008G017100 [exp]	19.44	0.8601
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Potri.015G004300 [exp]	20.71	0.8721

Compare expression of checked genes

Potri.013G060800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.