Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18260 124 / 6e-32 RING/U-box superfamily protein (.1) AT1G14180 92 / 7e-21 RING/U-box superfamily protein (.1.2) AT4G39140 75 / 2e-14 RING/U-box superfamily protein (.1.2.3.4.5) AT1G19680 71 / 5e-13 RING/U-box superfamily protein (.1) AT1G75400 67 / 8e-12 RING/U-box superfamily protein (.1) AT2G21500 64 / 5e-11 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032300 [exp] 665 / 0 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 86 / 6e-18 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.009G120000 [exp] 82 / 1e-16 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.005G231500 [exp] 78 / 2e-15 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.004G158400 [exp] 76 / 6e-15 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.018G119600 [exp] 65 / 8e-12 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 65 / 1e-11 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.006G180600 [exp] 50 / 1e-06 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020256 [exp] 375 / 1e-127 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 367 / 5e-115 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10036764 [exp] 82 / 2e-17 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10041970 [exp] 82 / 2e-16 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10017978 [exp] 81 / 4e-16 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10037162 [exp] 74 / 9e-14 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008046 [exp] 57 / 3e-09 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002316 [exp] 46 / 5e-05 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G060900.1 pacid=42811206 polypeptide=Potri.013G060900.1.p locus=Potri.013G060900 ID=Potri.013G060900.1.v4.1 annot-version=v4.1 ATGTGGGATTGTAGGTTACGGTCAGATGGTTTATCACATGGGTCTCGGGCAGTTCATGATTCATCATTTTCCTCAAATAGTAGGGGAAGCAGAAGCTGGG TGGGAAGTGAACAGTATGCCAATCATCATCATTCTGTATCTGATGGTGCACTCTCTTATTCAGATAGCACACCTGACAATGTTCAGGAGCCCCGATGGAC ATCACCAGTGCAAAAATTTAATCTTAGTGACCTTGCGGTCTCTACTGCTGGAGGATCAAGATCCCAGCCCACTTGGTTTCCATGCTCCACTGAGAGAAGA CTTGCCATCAGAACAAGTGTGACATCCCCTGGTTTTGGTTCCCCGTCCTCACTTTCTGAGTCCAGCCATTGGGAATCAACTAGCAAGCGACCATTTGCTT TCTCCAGTCGCAACTTTTCAAATCAACGCTCTTACATGTCAAAAGCTGTTTATCCATTAGTATTTCGCAACCCTGTGTCAGATTGTGAAACCTTTGGTGA TGCGGATAACAGTAGTCTTGGTAGGTTAACACCAGGTGAGGATCGGATATCACCATCTCATTGGCCTGATAACAGTTCAAGTGTTGATTACAAGTTCCAT AAAACCCTCACTGAACTTCAAAAGTTGGAGACGTCACCAGACCCCAGTGCAAGCTCTAGAAGAGAGGGTTTTAGATGGAGCAGTGCCAGCAGTTATGATC TGGGGATTGATGGAGAAAGGTTTGACATTGCAGAGCACATGGATATGGAGAGTCTGAGGTCCCCTAGTCGTCCTATAGTGGAACAAAAATGTGGAGTTTG TGGAAAACTTTTGTGGCAAAAGTCTCCCTGGAGCTCACATCGAATCATGAGAGGTAGTGACATGCCAATTGCTGGGGTATTACCCTGCAGCCATGTGTTC CATGCTGAATGTTTGGAACAAGTCACTCCAAAGACCCAGATTCATGACCCTCCTTGCCCTCTGTGCTTGAAAACCGTAGGATCAATTGAAGAGTCCCCAC CAGTTTCAGAGCCCTTGCAGATGGCTCTAAGATCTGTACGGAGAAGCAGAGGGGTGGTGATATCTGAGGCCCAGGGTAGTCACAGTAATACGGAAGCCTC TTATCATATCAAGGACAGATTGAGGAGAAACTGGCCCTGTACAGTGTCACCACGGAATGACAATGGGTCTTCAATAACCTGTCGTCTTAGAAGGCATTTT ACATTTAAGGCTGGAAAAGAACTTTTCAACGCTAAGGTGTTCCAGAAGACTGGTTCCTCTTCTAGCCAGAAACCAGCTTGA
AA sequence Show only first row Show all	>Potri.013G060900.1 pacid=42811206 polypeptide=Potri.013G060900.1.p locus=Potri.013G060900 ID=Potri.013G060900.1.v4.1 annot-version=v4.1 MWDCRLRSDGLSHGSRAVHDSSFSSNSRGSRSWVGSEQYANHHHSVSDGALSYSDSTPDNVQEPRWTSPVQKFNLSDLAVSTAGGSRSQPTWFPCSTERR LAIRTSVTSPGFGSPSSLSESSHWESTSKRPFAFSSRNFSNQRSYMSKAVYPLVFRNPVSDCETFGDADNSSLGRLTPGEDRISPSHWPDNSSSVDYKFH KTLTELQKLETSPDPSASSRREGFRWSSASSYDLGIDGERFDIAEHMDMESLRSPSRPIVEQKCGVCGKLLWQKSPWSSHRIMRGSDMPIAGVLPCSHVF HAECLEQVTPKTQIHDPPCPLCLKTVGSIEESPPVSEPLQMALRSVRRSRGVVISEAQGSHSNTEASYHIKDRLRRNWPCTVSPRNDNGSSITCRLRRHF TFKAGKELFNAKVFQKTGSSSSQKPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18260			RING/U-box superfamily protein...		Potri.013G060900 [exp]	0	1
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.008G040100 [exp]	2.64	0.8903
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	2.82	0.8818
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Potri.005G221100 [exp]	3.46	0.8707
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.007G128700 [exp]	6.70	0.8752
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	9.38	0.8645
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.014G150600 [exp]	10.19	0.8600
AT1G70150			zinc ion binding (.1)		Potri.010G037600 [exp]	13.63	0.8406
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Potri.001G092500 [exp]	14.69	0.8545
					Potri.008G005500 [exp]	15.71	0.8692
					Potri.001G181701 [exp]	16.43	0.8685

Compare expression of checked genes

Potri.013G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.