Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17930 735 / 0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT1G80930 76 / 1e-13 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G121100 [exp] 71 / 4e-12 AT1G80930 879 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014048 [exp] 771 / 0 AT5G17930 720 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10019865 [exp] 660 / 0 AT5G17930 621 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10002210 [exp] 74 / 3e-13 AT1G80930 909 / 0.0 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10003392 [exp] 64 / 4e-10 AT1G80930 491 / 1e-162 MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10011226 [exp] 51 / 1e-06 AT1G80930 266 / 2e-83 MIF4G domain-containing protein / MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02847 [poplar] [flax] MA3 MA3 domain CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Potri.013G061400.1 pacid=42810784 polypeptide=Potri.013G061400.1.p locus=Potri.013G061400 ID=Potri.013G061400.1.v4.1 annot-version=v4.1 ATGAGGTCAGGGCCTGATGAGAAGACACGCCGAGAAAGGCGAAAAGAAGATAGAAAAATGACAACGCAGAAAAAACATGAATCTTGGGTTCAACATCAGC AATTTAAAAAACAGAGGAGAGCTGAAGAAAATAAGAGAAAATTTGGAAATTCAAAGGCAAAATATGTGAACAAATCAAAGAACTTGAAAGAGAAAGAAGA TATGCAAGAAGATGCTACTAACTCGAGGAGAAATCAGAGTCCAGAGGAAAAGAATGTGCCAACAAAAATGGAAAGGAAATTGGGCTTGTTGGGACATAGT GGTTCTAATGCTCCAAAGACAGTGAAAGAAAAAAAGGGCATGAGGAGGAATTTGAAAACGAAGTTTGAAGAGTATCTTGAAATGGATACGAAAGATGCTT GTGCTGAAGAAGATTTGGAAATGGAAAGGAGACTTGCTAAGAAACTCAAATTAAAGGATGGAAAATTGAAGAGGATGGATGATGAAATGGACATGTTACT CGAGGGAATACCATCTGTGCTTGATTCTTTTGATAAAGGGGAAGTCCCAGATGCTAACCAGTTTACCATTGAGGGAGTTGAGGATACAACTTCTGATAAG AAACATAAGAAGAAAAAGTCTTTGAAGGAATCTTCAGAAGATGGGAGTGAGGATGTGACGGGAGCAATTTCTGAGCTGCAGGAAAGCTTAGGTGCAGAAG TGGGGCTTGAAGAAGGTGCCAGTGAGACACCTTCACATAATAGAAACAAAAAGAAGTCGAAGCGAAAGCAAGACATGGCAGGAGACATGACAATTGGTGT ATCTGACCCAGCAGAGACCCATGATGCGGAGGCCGTGCTGCAGGAAACTTCTAAGAAGGCGCCTGCAGTGGCCAGTAGTATAAAATATGTTGCTCCACAC TTGAGATCTCTTGCAGGAAATGAATCAGAAGAATATATTCAAATCCGTAGACGGGTCCGAGGTCTACTGAATAGGCTATCTGAATCCAATGTGGAATCAA TTACAGGCGAAATGGCTACCATCTTCCGTTCCACTATTCGCAGTGTCAGTACTCAGATTATCATTAATGAGGTGTTGGCAGCATGTTCTGGTGGTCCTCG TGGCAATGAACAGTATGCTGCTGTTTTTGCATCTTTTGTTGCTGGCTTGGCTTGCTCTGTTGGGATGGACTTCAGTGCAAAGTTCATGGCGTTGCTAGCT AAAGCTTTTGAGGATGAGTGCCTCAAAGAAGACAATATTTCCTTGCGTAATCTCACTCTTCTACTCTCCTATTTATGCATATTTGGAGTTTGCTCAAGTG ATCTGATATATGACTTCCTAATCACGCTGAGCAAGCGTTTGAGAGAGATTGATGTCTCCACTATCTTGACAGTTTTAAATTGCTGTGGGATGAAAATAAG GAGTGATGATCCCACTGCAATGAAGAACTTCATCCAGAGTGTACAGAACAGAGTGAATGAGCTGAAGGCCTCCTCTGTTGAAGGCCAGGCAAATATAAAT GGAAAAAGAATGGAGTTTATGCTTGAAACCATATTTGATATCAAAAACAACAAGAAAAGGCCCAAGGAGGAAACTGCACCTCATGCGCGGATAAAAAAGT GGCTACAGAAGTTAAGAGTTGAAGAAATTCTTATTAGAGGGCTAAAATGGAGCAAGCTGCTTGATCCTGACAACAAGGGCCAGTGGTGGCTGTCAGGGGG TATGGCTGCCAAAACAGATAATGTTCAAGAGGTTGCCAATACGATTGACAAAGACGTTCTGGAAGCCCAAAAGATGCTACAGCTAGCTTCCTCACAGAGG ATGAACACAGATGCCAGAAAAGCAATCTTTTGTATAATAATGAGTGGTGAGGACTACATCGATGCTTTTGAAAAGCTTCTGAGGTTGGACTTGGTTGGAA AGCAGGACAGAGAGATTATGCGAGTTATTGTTGAATGCTGTTTACAAGAAAAGATATTTAACAAGTATTACACTACCCTGGCTTCCAAGTTGTGTGAGCA TGACAAAAACCACAAATTTACTTTACAGTTTTGCATTTGGGACCACTTCAAAGAGCTGGAGTCAATGCAGCTATTAAGATCAATGCACCTAGCAAAATTC ATAGCAGAGATGGTTGGCTCTTTCACCCTCTCTCTTGCAGTTTTGAAGAGTGTAGAATTAAGTGATATCACACAGCTAACCCCAAAAAGGATCATGCATT TTCGTATGCTGTTTGAGGCCTTGTTTGAGTATCCTGATGAGGTTATATGGAACTCATTAACACGTGTTGCTGTCTCCCCTGAGCTAGAAACTCTCCGTCA TGGCATTGAGTTCTTCATCAGGGAGTACGTTGTCAAAACTAACAAGGCCTTTGCAAACAAATTCAAGATTTCAAAGAAAGCCCTTAATAATACTGAAGGA GTCCTCATGTGA
AA sequence Show only first row Show all	>Potri.013G061400.1 pacid=42810784 polypeptide=Potri.013G061400.1.p locus=Potri.013G061400 ID=Potri.013G061400.1.v4.1 annot-version=v4.1 MRSGPDEKTRRERRKEDRKMTTQKKHESWVQHQQFKKQRRAEENKRKFGNSKAKYVNKSKNLKEKEDMQEDATNSRRNQSPEEKNVPTKMERKLGLLGHS GSNAPKTVKEKKGMRRNLKTKFEEYLEMDTKDACAEEDLEMERRLAKKLKLKDGKLKRMDDEMDMLLEGIPSVLDSFDKGEVPDANQFTIEGVEDTTSDK KHKKKKSLKESSEDGSEDVTGAISELQESLGAEVGLEEGASETPSHNRNKKKSKRKQDMAGDMTIGVSDPAETHDAEAVLQETSKKAPAVASSIKYVAPH LRSLAGNESEEYIQIRRRVRGLLNRLSESNVESITGEMATIFRSTIRSVSTQIIINEVLAACSGGPRGNEQYAAVFASFVAGLACSVGMDFSAKFMALLA KAFEDECLKEDNISLRNLTLLLSYLCIFGVCSSDLIYDFLITLSKRLREIDVSTILTVLNCCGMKIRSDDPTAMKNFIQSVQNRVNELKASSVEGQANIN GKRMEFMLETIFDIKNNKKRPKEETAPHARIKKWLQKLRVEEILIRGLKWSKLLDPDNKGQWWLSGGMAAKTDNVQEVANTIDKDVLEAQKMLQLASSQR MNTDARKAIFCIIMSGEDYIDAFEKLLRLDLVGKQDREIMRVIVECCLQEKIFNKYYTTLASKLCEHDKNHKFTLQFCIWDHFKELESMQLLRSMHLAKF IAEMVGSFTLSLAVLKSVELSDITQLTPKRIMHFRMLFEALFEYPDEVIWNSLTRVAVSPELETLRHGIEFFIREYVVKTNKAFANKFKISKKALNNTEG VLM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	0	1
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	2.82	0.8883
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	2.82	0.8904
AT1G36990			unknown protein		Potri.005G172100 [exp]	4.89	0.8521
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.015G147200 [exp]	10.53	0.8697
AT3G02710			ARM repeat superfamily protein...		Potri.004G076600 [exp]	10.72	0.8630
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Potri.003G060500 [exp]	11.61	0.8520
AT2G44270		ROL5	repressor of lrx1 (.1.2)		Potri.005G083500 [exp]	11.83	0.8308
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Potri.004G228700 [exp]	12.16	0.8653
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	13.85	0.8597
AT1G71850			Ubiquitin carboxyl-terminal hy...		Potri.013G115500 [exp]	13.85	0.8244

Compare expression of checked genes

Potri.013G061400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.