Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CIMS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17920 1440 / 0 ATCIMS, ATMETS, ATMS1 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) AT3G03780 1407 / 0 ATMS2 methionine synthase 2 (.1.2.3) AT5G20980 1325 / 0 ATMS3 methionine synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038268 [exp] 1519 / 0 AT5G17920 1454 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.004G190900 [exp] 1441 / 0 AT5G17920 1401 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Potri.009G152800 [exp] 1436 / 0 AT5G17920 1394 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002620 [exp] 1440 / 0 AT5G17920 1430 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10020273 [exp] 1440 / 0 AT5G17920 1434 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10008422 [exp] 1399 / 0 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10003363 [exp] 1393 / 0 AT5G17920 1384 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [poplar] [flax] Methionine_synt PF01717 [poplar] [flax] Meth_synt_2 Cobalamin-independent synthase, Catalytic domain CL0160 [poplar] [flax] Methionine_synt PF08267 [poplar] [flax] Meth_synt_1 Cobalamin-independent synthase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G061800.6 pacid=42812258 polypeptide=Potri.013G061800.6.p locus=Potri.013G061800 ID=Potri.013G061800.6.v4.1 annot-version=v4.1 ATGGCATCACACATTGTTGGATATCCTCGTATGGGCCCCAAGAGAGAGCTCAAGTTTGCATTGGAATCTTTCTGGGATGGCAAGAGCAGTGCCGAGGATT TGCAGAAAGTTGCAGCTGATCTCAGGGAATCCATCTGGAAGCAGATGACTGATGCTGGGATCAAATACATCCCTAGCAACACCTTCTCTTACTACGACCA GATGCTCGACACCACTGCTATGCTCGGCGCTGTTCCACCTAGATATGGCTGGAATGGTGGTGAGATTGGATTCGATGTTTATTTCTCCATGGCCAGAGGA AATGCCTCTGTTCCTGCTATGGAAATGACCAAGTGGTTCGACACCAACTACCATTTCATTGTCCCTGAATTGGGTCCTGATGTCAACTTCTCTTATGCTT CTCACAAGGCAGTGACTGAATACAAGGAGGCTAAGGCACTTGGAGTAGACACAATACCGGTCCTTATTGGCCCAGTCTCCTACTTGTTGCTATCCAAACC TGCAAAGGGTGTTGAGAAAACTTTTTCTCTTCTCTCCCTTCTTGGAAAAATCCTTCCAATCTACAAGGAGGTTATTTCAGAGCTTAAAGAAGCCGGTGCA TCCTGGATTCAGTTTGATGAGCCTACGCTTGTAATGGATCTTGAATCTCACAAATTGGAAGCATTTACCGAGGCCTATTCTGAACTGGAGTCAACTGTAT CTGGCTTGAACGTTCTCATTGAAACCTACTTCGCTGATATTCCTGCCAAGCAATACAAGACCCTCACCTCTTTGAAGGGTGTTACTGCACTCGGTTTTGA TTTGGTTCGTGGAACCAAGACCCTTGACTTGATCAAGGGAGAGTTCCCCAAGGGAAAATATCTCTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCC AATGATCTTGCTGCTTCTCTCAGCACCCTCGTAGCTCTTGAGGGCATTGTAGGCAAAGACAAGCTTGTAGTCTCCACCTCTTGCTCTCTTCTCCACACTG CTGTTGATCTTGTCAACGAGACCAAGCTTGACAAGGAAATCAAATCATGGCTTGCATTTGCTGCCCAGAAAGTTGTCGAAGTAAATGCATTGGCCAAGGC TTTGGCCGGTGAAAAGGATGAGGAATTCTTCTCTGCTAATGTTGCTGCTCATACCTCAAGGAAATCCTCCCCACGTGTCAACAATGAGGCAGTTCAAAAG GCGGCTGCTGCATTGAAGGGTTCTGATCACCGTCGTGTTACAAATGTTAGTGCCAGACTTGATGCTCAGCAGAAAAAGCTTAACCTTCCGATCCTCCCAA CCACCACAATTGGTTCCTTCCCACAAACCATGGAACTAAGGAAAGTCCGACGTGAATACAAGGCCAAAAAGGTCTCTGAAGTTGATTATGTTGAAGCCAT CAAGAAGGAAATTAGCAAAGTTGTCAAACTTCAAGAGGAATTTGATATTGATGTTTTGGTTCATGGAGAGCCTGAGAGAAATGATATGGTCGAATACTTC GGAGAGCAATTGTCAGGTTTTGTGTTCTCTGCCAATGGTTGGGTGCAATCTTATGGTTCTCGCTGTGTGAAGCCACCAATCATCTATGGTGATGTGAGTC GCCCTAAGTCGATGACTGTCTTCTGGTCCGCTTTGGCTCAGAGCATGACTTCCCGCCCAATGAAAGGAATGCTTACAGGCCCTGTCACCATACTCAACTG GTCCTTTGTCCGAAATGACCAACCTAGATTTGAGACCTGCTACCAGATTGCTTTGGCCATTAAGGATGAAGTGGAGGATCTTGAGAAGAATGGTATCACT GTTATCCAAATCGATGAGGCTGCTTTGAGAGAGGGTTTGCCTCTTAGAAAATCCGAACAAGCTTTTTACTTGGATTGGGCAGTCCACTCCTTCAGGATCA CCAATTGTGGCGTACAGGACACCACCCAGATCCACACTCACATGTGCTACTCCAACTTCAATGACATTATCCACTCAATCATCGACATGGATGCTGATGT GATCACCATCGAGAACTCTCGCTCCGATGAAAAGCTTCTCTCAGTCTTCCGTGAGGGAGTGAAGTATGGTGCTGGAATTGGTCCTGGTGTCTATGATATC CACTCTCCCAGAATACCATCAACCGAGGAGATTGCTGATAGAATCAACAAGATGCTTGCAGTGCTTGAGACAAACATATTGTGGGTTAACCCTGACTGTG GACTCAAAACTCGCAAGTACTCTGAGGTGAAGCCAGCTCTCAAGAACATGGTTGATGCTGCCAAGCTCCTCCGCACCCAACTTGCCAGTGCCAAGTGA
AA sequence Show only first row Show all	>Potri.013G061800.6 pacid=42812258 polypeptide=Potri.013G061800.6.p locus=Potri.013G061800 ID=Potri.013G061800.6.v4.1 annot-version=v4.1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRESIWKQMTDAGIKYIPSNTFSYYDQMLDTTAMLGAVPPRYGWNGGEIGFDVYFSMARG NASVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVTEYKEAKALGVDTIPVLIGPVSYLLLSKPAKGVEKTFSLLSLLGKILPIYKEVISELKEAGA SWIQFDEPTLVMDLESHKLEAFTEAYSELESTVSGLNVLIETYFADIPAKQYKTLTSLKGVTALGFDLVRGTKTLDLIKGEFPKGKYLFAGVVDGRNIWA NDLAASLSTLVALEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDKEIKSWLAFAAQKVVEVNALAKALAGEKDEEFFSANVAAHTSRKSSPRVNNEAVQK AAAALKGSDHRRVTNVSARLDAQQKKLNLPILPTTTIGSFPQTMELRKVRREYKAKKVSEVDYVEAIKKEISKVVKLQEEFDIDVLVHGEPERNDMVEYF GEQLSGFVFSANGWVQSYGSRCVKPPIIYGDVSRPKSMTVFWSALAQSMTSRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKNGIT VIQIDEAALREGLPLRKSEQAFYLDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI HSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYSEVKPALKNMVDAAKLLRTQLASAK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	0	1	Pt-CIMS.2
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142800 [exp]	1.41	0.8458
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	1.73	0.8389
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	2.82	0.8416
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.018G059100 [exp]	4.00	0.8179
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G033900 [exp]	4.24	0.8213
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	7.07	0.8228
AT3G53260		PAL2, ATPAL2	phenylalanine ammonia-lyase 2 ...		Potri.010G224100 [exp]	7.93	0.8186	PAL.3
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	10.39	0.7989
AT2G07180			Protein kinase superfamily pro...		Potri.006G079600 [exp]	13.41	0.7765
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.003G059200 [exp]	16.24	0.8233

Compare expression of checked genes

Potri.013G061800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.