Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) AT4G14390 98 / 4e-21 Ankyrin repeat family protein (.1) AT5G13530 98 / 4e-21 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G32500 80 / 2e-15 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G53470 77 / 3e-15 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 76 / 7e-15 ACBP2 acyl-CoA binding protein 2 (.1) AT3G04710 76 / 2e-14 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G26650 76 / 3e-14 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT5G02620 74 / 6e-14 ATANK1, ANK1 ankyrin-like1 (.1) AT4G05040 74 / 1e-13 ankyrin repeat family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185200 [exp] 237 / 8e-72 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 170 / 7e-47 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.001G333600 [exp] 107 / 2e-24 AT5G14230 975 / 0.0 unknown protein Potri.001G029600 [exp] 103 / 1e-22 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.010G161300 [exp] 92 / 8e-21 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G274900 [exp] 94 / 9e-20 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.003G103400 [exp] 76 / 3e-15 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.010G057300 [exp] 78 / 7e-15 AT5G14230 843 / 0.0 unknown protein Potri.012G017700 [exp] 75 / 3e-14 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020272 [exp] 723 / 0 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002621 [exp] 503 / 1e-176 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10010667 [exp] 488 / 2e-171 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10007432 [exp] 258 / 3e-81 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10003748 [exp] 168 / 4e-46 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10036990 [exp] 102 / 6e-23 AT5G14230 510 / 5e-174 unknown protein Lus10015811 [exp] 94 / 6e-20 AT5G14230 727 / 0.0 unknown protein Lus10024136 [exp] 94 / 1e-19 AT5G13530 2095 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10039491 [exp] 94 / 1e-19 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10028039 [exp] 90 / 3e-19 AT3G02850 60 / 1e-17 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.013G062000.1 pacid=42812084 polypeptide=Potri.013G062000.1.p locus=Potri.013G062000 ID=Potri.013G062000.1.v4.1 annot-version=v4.1 ATGGACAGGCTTATTGGTTTGGAGCCATCGAATCTTGTATCTATCAGAATTGAACCTGGACAGAAATGCTATGGTGAACTCACTCTCCGCAATGTTATGT ACACTATGCCGGTGGCCTTCAGGATCCAGGCCTTGAACAAGACTCGGTACACGATCAAGCCACAGTCAGGAATCATATCTCCTCTGGCAACACTAACTAT AGAGATCACATATCATCTCTCTCCAGGTTCTCTTCTTCCAGAGACATTTCCTCACTGTGAGGACTCGTTTCTTTTGCATAGCGTGGTGGTTCCTGGCGCA GCAATCAAAGATGCTACATCAAGTATGGATGCAGTTCCTATTGACTGGTTCACAACCAGGAAAAAACAGGTGTTCATAGATAGTGGCATCAAGGTCATGT TTGTTGGGTCGCCAATTCTTGCTCAGCTAGTTATGGATGGCTTAATGGATGAGATCAGAGAAGTACTCGAGCATAGTGACCCGGCATGGAATCCAGCTGA TGCGGTTGATTTTCATGGGAAAACATTACTTCATTTAGCCATCTCTCAAAGCCGAGCAGACATTGTACAGTTACTTCTTGAATTTGAGCCGGATGTGGAG TTTCAAAGCCGATCAGGTTATAGTCCACTTGAGGCAGCTGCAAGATCTGGTGAGGCTTTGATTGTTGAGCTTTTATTAGCTCGTCGAGCCAGCACAGAAA GATCACAGTCCTCAACTTGGGGTCCAATCCACCTTGCAGCTGGAGGGGGCCATTTGGAGGTGCTAAGGCTTCTTTTACTTAAAGGAGCCAATGTCAACGC TCTCACTAAGGATGGAAATACCGCCTTGCATCTTGCTGTCGAGGAGCGTAGACGCGATTGCGCACGCCTTTTGTTAGCTAGTGGAGCAAAAGCTGATATT CGCAATAATGGAGATGGCGATACACCCCTGCACATAGCTGCAGGATTGGGAGATGAGAACATGGTCAAGCTGCTGTTACATAAAGGTGCCAATAAAGACA TCCGCAATAAGAACGGCAAGATTGCCTATGATATTGCTGCAGAACATGGCCACGCTCGCCTTTTTGATGCCTTGAAATTGGGTGACAGTTTATGCATAGC TGCACGCAAGGGAGAGGTGAGGACCATCAACAGGTTGATTGAAAACGGGGCAGCAATCAATGGCCGTGACCAACACGGATGGACTGCGTTGCATAGAGCT GCATTTAAAGGAAAAACCGATGCTGTGCGGGTTTTGATTGAAAAGGGAATTGATGTTGATGCAAAGGATGAAGATGGTTACACTGCATTGCATTGTGCTG TGGAGTCTGGTCATGCAGATGTGATTGAGTTGTTGGTTAAGAAAGGGGCGGACGTTGAAGCACGGACTAATAAGGGTGTTACCGCCTTACAGATTGCTGA GTCTTTGCACTATGTGGGCATCACCAGAGTGCTCATTCATGGTGGAGCAGCTAAAGACGGCGTCACACAATTGGTGGTTCCGGCTTTACACTCTCCTTTC AGGAATGGCATGGCAGGGAAAGAGGTGGAGACCAAACCAATGAAGAAGAGACCATTAAGGGCAAGAACATTGCGTGGTAGCTTTGATCGGGCAATGCCAT TAGCCGTGGTTTAG
AA sequence Show only first row Show all	>Potri.013G062000.1 pacid=42812084 polypeptide=Potri.013G062000.1.p locus=Potri.013G062000 ID=Potri.013G062000.1.v4.1 annot-version=v4.1 MDRLIGLEPSNLVSIRIEPGQKCYGELTLRNVMYTMPVAFRIQALNKTRYTIKPQSGIISPLATLTIEITYHLSPGSLLPETFPHCEDSFLLHSVVVPGA AIKDATSSMDAVPIDWFTTRKKQVFIDSGIKVMFVGSPILAQLVMDGLMDEIREVLEHSDPAWNPADAVDFHGKTLLHLAISQSRADIVQLLLEFEPDVE FQSRSGYSPLEAAARSGEALIVELLLARRASTERSQSSTWGPIHLAAGGGHLEVLRLLLLKGANVNALTKDGNTALHLAVEERRRDCARLLLASGAKADI RNNGDGDTPLHIAAGLGDENMVKLLLHKGANKDIRNKNGKIAYDIAAEHGHARLFDALKLGDSLCIAARKGEVRTINRLIENGAAINGRDQHGWTALHRA AFKGKTDAVRVLIEKGIDVDAKDEDGYTALHCAVESGHADVIELLVKKGADVEARTNKGVTALQIAESLHYVGITRVLIHGGAAKDGVTQLVVPALHSPF RNGMAGKEVETKPMKKRPLRARTLRGSFDRAMPLAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03430			Ankyrin repeat family protein ...		Potri.013G062000 [exp]	0	1
AT2G23770			protein kinase family protein ...		Potri.009G010300 [exp]	7.00	0.9510
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.012G071200 [exp]	10.95	0.9463
AT1G71910			unknown protein		Potri.019G084500 [exp]	14.76	0.8612
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039500 [exp]	15.19	0.9485
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.006G239402 [exp]	17.32	0.9482
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G185900 [exp]	17.54	0.9439
AT2G20030			RING/U-box superfamily protein...		Potri.018G042501 [exp]	17.60	0.9419
AT2G33580			Protein kinase superfamily pro...		Potri.007G032300 [exp]	19.36	0.9470
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	26.49	0.9369
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Potri.011G010000 [exp]	29.08	0.9424

Compare expression of checked genes

Potri.013G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.