Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55000 413 / 2e-146 FIP2 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) AT3G09030 57 / 6e-09 BTB/POZ domain-containing protein (.1) AT2G24240 46 / 2e-05 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) AT2G44920 42 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G038400 [exp] 508 / 0 AT5G55000 414 / 1e-146 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Potri.003G129300 [exp] 55 / 2e-08 AT5G41330 579 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.006G185300 [exp] 49 / 3e-06 AT2G24240 773 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.018G107600 [exp] 47 / 9e-06 AT2G24240 766 / 0.0 BTB/POZ domain with WD40/YVTN repeat-like protein (.1) Potri.016G112900 [exp] 47 / 1e-05 AT3G09030 525 / 0.0 BTB/POZ domain-containing protein (.1) Potri.008G058800 [exp] 45 / 3e-05 AT2G44920 253 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G200000 [exp] 44 / 6e-05 AT2G44920 256 / 4e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002622 [exp] 459 / 3e-164 AT5G55000 462 / 1e-165 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10020270 [exp] 418 / 9e-145 AT5G55000 430 / 2e-149 potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein (.1.2) Lus10000520 [exp] 42 / 0.0002 AT2G44920 286 / 6e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF02214 [poplar] [flax] BTB_2 BTB/POZ domain CL0505 [poplar] [flax] Pentapeptide PF13599 [poplar] [flax] Pentapeptide_4 Pentapeptide repeats (9 copies)
Representative CDS sequence Show only first row Show all	>Potri.013G062500.5 pacid=42812719 polypeptide=Potri.013G062500.5.p locus=Potri.013G062500 ID=Potri.013G062500.5.v4.1 annot-version=v4.1 ATGCAAATAATGAAAGACCACACTTTCTCTTCTCTAATTCGTCTCAACATCGGAGGGAAGAAATTTTGCACCACAATTGATACATTAACGCGGGGTGAGC CTGATTCCATGCTTGCTGCTATGTTCAGAGGAAGACTCATGGTGTCTGAGGATCCTGATAAGGGATACGTTTTCATTGATAGGGACGGGAAACACTTCCG GCATATTTTGAATTGGTTGAGGGATGGTGTGGTTCCCACACTAACTGATGCTGGATATTCAGAGCTTATGCGAGAGGCAGAATACTATCAGCTTCTTGGG CTCTTGGAGGGAATCAATTCTGTTCTGAATAAGAGGAAGGAAGGTAATGAGTTGGATGCTGAATTGACACGGGCAGATATCATCAAATGTATACAGTATA AGAAAGTGAAATTTCGAGGAATTAATTTTTCTGGCCTTGATCTCTCCAAACTGGACCTCTCATATGTTGACTTTAGCTATGCATCTCTTCAAAATGTGCT CTTCTCACATGCAAACCTACTTTGTGCAAAATTCCGGGATGTGGATGCCGAGGGTTCCATATTCCACAATGCAACTTTGCGGGAGTGTGAATTTACTGGT GCAAATCTCCGAGGAGCTTCTTTAGCAGGTGCCAACCTTCAGAGTGCAACCCTACAAGATGCTTGTTTGGTTGATTGCAATTTCTGCGGAGCAAATCTGC GTTCTGCACACTTACAGACTGCTGATCTCACTAATGCCAACTTTGAAGGAGCTAATCTAGAAGGAGCCAATCTGAAGGGTGCAAAATTGAATAATGCCAA TCTAAAGGGTGCAAATCTTCAACGGGCTTATCTACGACGTGTCAATCTTCAAAATGCACATTTGGAAGATGCAAAGCTTGATGGTGCCAATTTGCTTGGA GCAATTCGATAA
AA sequence Show only first row Show all	>Potri.013G062500.5 pacid=42812719 polypeptide=Potri.013G062500.5.p locus=Potri.013G062500 ID=Potri.013G062500.5.v4.1 annot-version=v4.1 MQIMKDHTFSSLIRLNIGGKKFCTTIDTLTRGEPDSMLAAMFRGRLMVSEDPDKGYVFIDRDGKHFRHILNWLRDGVVPTLTDAGYSELMREAEYYQLLG LLEGINSVLNKRKEGNELDAELTRADIIKCIQYKKVKFRGINFSGLDLSKLDLSYVDFSYASLQNVLFSHANLLCAKFRDVDAEGSIFHNATLRECEFTG ANLRGASLAGANLQSATLQDACLVDCNFCGANLRSAHLQTADLTNANFEGANLEGANLKGAKLNNANLKGANLQRAYLRRVNLQNAHLEDAKLDGANLLG AIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.013G062500 [exp]	0	1
AT2G43210			Ubiquitin-like superfamily pro...		Potri.007G123800 [exp]	5.91	0.7151
AT3G49430		SRP34A, SR34a, ...	Serine/Arginine-Rich Protein S...		Potri.012G021800 [exp]	9.48	0.7216
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.017G007500 [exp]	11.13	0.7281
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.016G063800 [exp]	11.40	0.7466
AT5G05950		MEE60	maternal effect embryo arrest ...		Potri.010G196100 [exp]	11.87	0.6346
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Potri.018G046200 [exp]	14.96	0.6804
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Potri.002G257100 [exp]	18.00	0.7192
AT3G54190			Transducin/WD40 repeat-like su...		Potri.016G142600 [exp]	24.81	0.7121
AT5G15270			RNA-binding KH domain-containi...		Potri.017G085500 [exp]	31.46	0.6180
AT5G26610			D111/G-patch domain-containing...		Potri.005G002700 [exp]	32.24	0.6551

Compare expression of checked genes

Potri.013G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.